1 Response_reg#1
3-111 aa · 109 aa · 50.2% of protein
Raw token
Response_reg:3:1.12e-28:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DVA89_RS00425
Response regulator OmpR family
Clostridioides difficile · GCF_003324015
ClassRRTypeOmpRLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003324015#DVA89_RS00425Stable P2CS identifier used across views.
GenomeGCF_003324015Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 217 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-214 aa · 73 aa · 33.6% of protein
Raw token
Trans_reg_C:142:1.18e-22:214:78:77- Raw architecture: Response_reg:3:1.12e-28:111:111:111#Trans_reg_C:142:1.18e-22:214:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003324015::NZ_KZ848305.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span85648-87617Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_003324015::NZ_KZ848305.1::G00036Context members
DVA89_RS00420DVA89_RS00425
Partner locus tags
DVA89_RS00420DVA89_RS00425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002285815.1Primary protein accession used for annex mappings.
UniProt accessionQ3Y3Y4Primary UniProt accession resolved in the annex database.
UniProt IDQ3Y3Y4_ENTFDDisplay identifier provided by UniProt.
GO / PubMed7 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDVA89_RS00425Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_KZ848305.1Sequence record reported by the local genomic context database.
Genomic interval86 964-87 617 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span85 648-87 617 ntGCF_003324015::NZ_KZ848305.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003324015::NZ_KZ848305.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KZ848305.1All displayed genes belong to this local TCS context.
Neighborhood span85 648-87 617 nt1 970 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
85 648 nt87 617 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DVA89_RS00420GCF_003324015#DVA89_RS00420
HKClassic
85 648-86 967 nt · Reverse (-)
DVA89_RS00425GCF_003324015#DVA89_RS00425
RROmpRCurrent focus
86 964-87 617 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS08945Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1847442
Simplified PFAM architecture for RROC_1847442
PFAM domain coverage: 181 / 217 aa (83.4%)
1 aa217 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-110] | Trans_reg_C[142-214]
- Domain count: 2
- Matched identifier: RROC_1847442
- Positioned domains: Response_reg 3-110 ; Response_reg 3-110 ; Trans_reg_C 142-214 ; Trans_reg_C 142-214
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS08945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003324015
AssemblyASM332401v1 · Scaffoldhaploid
Genome composition4 229 048 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key