1 HAMP#1
59-127 aa · 69 aa · 19.2% of protein
Raw token
HAMP:59:0.0000000666:127:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DET63_RS09090
Histidine kinase, Classic
Bacillus sp. DB-2 · GCF_003315125
ClassHKTypeClassicLength360 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003315125#DET63_RS09090Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length360 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage231 / 360 aa (64.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa360 aa
Domain-by-domain annotation3 items
2 HisKA#2
139-202 aa · 64 aa · 17.8% of protein
Raw token
HisKA:139:0.00000000000000986:202:64:643 HATPase_c#3
252-349 aa · 98 aa · 27.2% of protein
Raw token
HATPase_c:252:1.94e-17:349:98:109- Raw architecture: HAMP:59:0.0000000666:127:69:69#HisKA:139:0.00000000000000986:202:64:64#HATPase_c:252:1.94e-17:349:98:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003315125::NZ_QNRN01000004.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span270230-271995Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDET63_104265RefSeq proteinWP_113936494.1
Context group ID
GCF_003315125::NZ_QNRN01000004.1::G00029Context members
DET63_RS09090DET63_RS09095
Partner locus tags
DET63_RS09090DET63_RS09095
Partner old locus tags
DET63_104265DET63_104266
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_113936494.1Primary protein accession used for annex mappings.
UniProt accessionA0A3D9V622Primary UniProt accession resolved in the annex database.
UniProt IDA0A3D9V622_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDET63_RS09090Primary locus identifier stored in the genes table.
Old locus tagDET63_104265Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QNRN01000004.1Sequence record reported by the local genomic context database.
Genomic interval270 230-271 312 nt1 083 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span270 230-271 995 ntGCF_003315125::NZ_QNRN01000004.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003315125::NZ_QNRN01000004.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QNRN01000004.1All displayed genes belong to this local TCS context.
Neighborhood span270 230-271 995 nt1 766 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
270 230 nt271 995 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DET63_RS09090GCF_003315125#DET63_RS09090
HKClassicCurrent focus
270 230-271 312 nt · Reverse (-)
DET63_RS09095GCF_003315125#DET63_RS09095
RROmpR
271 309-271 995 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003315125#DET63_RS09090The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2748502
Simplified PFAM architecture for HKOC_2748502
PFAM domain coverage: 209 / 360 aa (58.1%)
1 aa360 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[84-126] | HisKA[139-202] | HATPase_c[252-353]
- Domain count: 3
- Matched identifier: HKOC_2748502
- Positioned domains: HAMP 84-126 ; HisKA 139-202 ; HATPase_c 252-353
Cluster members and taxonomy
Representative gene: GCF_003315125#DET63_RS09090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 030 092 · GCF_003315125
AssemblyASM331512v1 · Scaffoldhaploid
Genome composition5 798 937 bp · 35,0% GCBacillus sp. DB-2
Signal transduction countsGenes 120 · HK 65 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key