1 Response_reg#1
1-110 aa · 110 aa · 50.7% of protein
Raw token
Response_reg:1:7.93e-27:110:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF27640_RS14950
Response regulator OmpR family
Clostridioides difficile · GCF_003313585
ClassRRTypeOmpRLength217 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003313585#CDIF27640_RS14950Stable P2CS identifier used across views.
GenomeGCF_003313585Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 217 aa (84.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-217 aa · 73 aa · 33.6% of protein
Raw token
Trans_reg_C:145:1.19e-22:217:74:77- Raw architecture: Response_reg:1:7.93e-27:110:111:111#Trans_reg_C:145:1.19e-22:217:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003313585::NZ_CP011848.1::G00047
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3194007-3194660Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF27640_02979RefSeq proteinWP_022619262.1
Context group ID
GCF_003313585::NZ_CP011848.1::G00047Context members
CDIF27640_RS14950
Partner locus tags
CDIF27640_RS14950
Partner old locus tags
CDIF27640_02979
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022619262.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF27640_RS14950Primary locus identifier stored in the genes table.
Old locus tagCDIF27640_02979Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP011848.1Sequence record reported by the local genomic context database.
Genomic interval3 194 007-3 194 660 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 194 007-3 194 660 ntGCF_003313585::NZ_CP011848.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003313585::NZ_CP011848.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP011848.1All displayed genes belong to this local TCS context.
Neighborhood span3 194 007-3 194 660 nt654 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 194 007 nt3 194 660 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDIF27640_RS14950GCF_003313585#CDIF27640_RS14950
RROmpRCurrent focus
3 194 007-3 194 660 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0214545Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1847432
Simplified PFAM architecture for RROC_1847432
PFAM domain coverage: 183 / 217 aa (84.3%)
1 aa217 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[1-109] | Trans_reg_C[144-217]
- Domain count: 2
- Matched identifier: RROC_1847432
- Positioned domains: Response_reg 1-109 ; Response_reg 1-109 ; Trans_reg_C 144-217 ; Trans_reg_C 144-217
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0214545
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 358 total members. Page 1 / 8.
GCF_000003215#QAC_RS0214545 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003313585
AssemblyASM331358v1 · Complete Genomehaploid
Genome composition4 229 629 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key