1 HAMP#1
62-131 aa · 70 aa · 18.6% of protein
Raw token
HAMP:62:0.0000000000132:131:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF27638_RS16620
Histidine kinase, Classic
Clostridioides difficile · GCF_003313545
ClassHKTypeClassicLength376 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003313545#CDIF27638_RS16620Stable P2CS identifier used across views.
GenomeGCF_003313545Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length376 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 376 aa (65.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
156-221 aa · 66 aa · 17.6% of protein
Raw token
HisKA:156:0.00000000000000561:221:66:643 HATPase_c#3
267-376 aa · 110 aa · 29.3% of protein
Raw token
HATPase_c:267:9.54e-17:376:111:109- Raw architecture: HAMP:62:0.0000000000132:131:70:69#HisKA:156:0.00000000000000561:221:66:64#HATPase_c:267:9.54e-17:376:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003313545::NZ_CP011846.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3582935-3584733Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF27638_03302RefSeq proteinWP_009891645.1
Context group ID
GCF_003313545::NZ_CP011846.1::G00051Context members
CDIF27638_RS16620CDIF27638_RS16625
Partner locus tags
CDIF27638_RS16620CDIF27638_RS16625
Partner old locus tags
CDIF27638_03302CDIF27638_03303
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009891645.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3NB30Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3NB30_CLODCDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF27638_RS16620Primary locus identifier stored in the genes table.
Old locus tagCDIF27638_03302Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP011846.1Sequence record reported by the local genomic context database.
Genomic interval3 582 935-3 584 065 nt1 131 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 582 935-3 584 733 ntGCF_003313545::NZ_CP011846.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003313545::NZ_CP011846.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP011846.1All displayed genes belong to this local TCS context.
Neighborhood span3 582 935-3 584 733 nt1 799 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 582 935 nt3 584 733 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF27638_RS16620GCF_003313545#CDIF27638_RS16620
HKClassicCurrent focus
3 582 935-3 584 065 nt · Reverse (-)
CDIF27638_RS16625GCF_003313545#CDIF27638_RS16625
RROmpR
3 584 062-3 584 733 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0216165Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2641393
Simplified PFAM architecture for HKOC_2641393
PFAM domain coverage: 227 / 376 aa (60.4%)
1 aa376 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[79-131] | HisKA[156-221] | HATPase_c[268-375]
- Domain count: 3
- Matched identifier: HKOC_2641393
- Positioned domains: HAMP 79-131 ; HisKA 156-221 ; HATPase_c 268-375
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0216165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003313545
AssemblyASM331354v1 · Complete Genomehaploid
Genome composition4 229 698 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key