1 Response_reg#1
7-117 aa · 111 aa · 47.4% of protein
Raw token
Response_reg:7:2.41e-34:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF27638_RS02940
Response regulator OmpR family
Clostridioides difficile · GCF_003313545
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003313545#CDIF27638_RS02940Stable P2CS identifier used across views.
GenomeGCF_003313545Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 234 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-231 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:155:5.71e-27:231:77:77- Raw architecture: Response_reg:7:2.41e-34:117:111:111#Trans_reg_C:155:5.71e-27:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003313545::NZ_CP011846.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span550658-552960Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF27638_00590RefSeq proteinWP_003439080.1
Context group ID
GCF_003313545::NZ_CP011846.1::G00008Context members
CDIF27638_RS02935CDIF27638_RS02940
Partner locus tags
CDIF27638_RS02935CDIF27638_RS02940
Partner old locus tags
CDIF27638_00589CDIF27638_00590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003439080.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N8K7Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N8K7_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF27638_RS02940Primary locus identifier stored in the genes table.
Old locus tagCDIF27638_00590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP011846.1Sequence record reported by the local genomic context database.
Genomic interval552 256-552 960 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span550 658-552 960 ntGCF_003313545::NZ_CP011846.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003313545::NZ_CP011846.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP011846.1All displayed genes belong to this local TCS context.
Neighborhood span550 658-552 960 nt2 303 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
550 658 nt552 960 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF27638_RS02935GCF_003313545#CDIF27638_RS02935
HKClassic
550 658-552 265 nt · Forward (+)
CDIF27638_RS02940GCF_003313545#CDIF27638_RS02940
RROmpRCurrent focus
552 256-552 960 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0202675Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047051
Simplified PFAM architecture for RROC_1047051
PFAM domain coverage: 188 / 234 aa (80.3%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-117] | Trans_reg_C[155-231]
- Domain count: 2
- Matched identifier: RROC_1047051
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117 ; Trans_reg_C 155-231 ; Trans_reg_C 155-231
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0202675
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 2 384 total members. Page 1 / 48.
GCF_000003215#QAC_RS0202675 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_003313545
AssemblyASM331354v1 · Complete Genomehaploid
Genome composition4 229 698 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key