1 HAMP#1
101-166 aa · 66 aa · 16.8% of protein
Raw token
HAMP:101:0.00000000000603:166:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4Q21_RS09365
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_003312465
ClassHKTypeClassicLength392 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003312465#C4Q21_RS09365Stable P2CS identifier used across views.
GenomeGCF_003312465Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length392 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 392 aa (56.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa392 aa
Domain-by-domain annotation3 items
2 HisKA#2
177-240 aa · 64 aa · 16.3% of protein
Raw token
HisKA:177:0.0000000000244:240:64:643 HATPase_c#3
286-377 aa · 92 aa · 23.5% of protein
Raw token
HATPase_c:286:1.46e-21:377:93:109- Raw architecture: HAMP:101:0.00000000000603:166:68:69#HisKA:177:0.0000000000244:240:64:64#HATPase_c:286:1.46e-21:377:93:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003312465::NZ_CP030777.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1930013-1931853Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4Q21_09365RefSeq proteinWP_055192415.1
Context group ID
GCF_003312465::NZ_CP030777.1::G00022Context members
C4Q21_RS09360C4Q21_RS09365
Partner locus tags
C4Q21_RS09360C4Q21_RS09365
Partner old locus tags
C4Q21_09360C4Q21_09365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055192415.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4Q21_RS09365Primary locus identifier stored in the genes table.
Old locus tagC4Q21_09365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP030777.1Sequence record reported by the local genomic context database.
Genomic interval1 930 675-1 931 853 nt1 179 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 930 013-1 931 853 ntGCF_003312465::NZ_CP030777.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003312465::NZ_CP030777.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP030777.1All displayed genes belong to this local TCS context.
Neighborhood span1 930 013-1 931 853 nt1 841 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 930 013 nt1 931 853 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C4Q21_RS09360GCF_003312465#C4Q21_RS09360
RROmpR
1 930 013-1 930 687 nt · Forward (+)
C4Q21_RS09365GCF_003312465#C4Q21_RS09365
HKClassicCurrent focus
1 930 675-1 931 853 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003312465#C4Q21_RS09365The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2512730
Simplified PFAM architecture for HKOC_2512730
PFAM domain coverage: 207 / 392 aa (52.8%)
1 aa392 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[115-165] | HisKA[178-240] | HATPase_c[286-378]
- Domain count: 3
- Matched identifier: HKOC_2512730
- Positioned domains: HAMP 115-165 ; HisKA 178-240 ; HATPase_c 286-378
Cluster members and taxonomy
Representative gene: GCF_003312465#C4Q21_RS09365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003312465
AssemblyASM331246v1 · Complete Genomehaploid
Genome composition2 970 937 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 51 · HK 24 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key