1 Response_reg#1
2-114 aa · 113 aa · 49.6% of protein
Raw token
Response_reg:2:3.74e-31:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4Q21_RS07290
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_003312465
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003312465#C4Q21_RS07290Stable P2CS identifier used across views.
GenomeGCF_003312465Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 228 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-220 aa · 73 aa · 32.0% of protein
Raw token
Trans_reg_C:148:5.79e-28:220:76:77- Raw architecture: Response_reg:2:3.74e-31:114:113:111#Trans_reg_C:148:5.79e-28:220:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003312465::NZ_CP030777.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1496926-1498958Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4Q21_07290RefSeq proteinWP_005925707.1
Context group ID
GCF_003312465::NZ_CP030777.1::G00015Context members
C4Q21_RS07290C4Q21_RS07295
Partner locus tags
C4Q21_RS07290C4Q21_RS07295
Partner old locus tags
C4Q21_07290C4Q21_07295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005925707.1Primary protein accession used for annex mappings.
UniProt accessionA8SF27Primary UniProt accession resolved in the annex database.
UniProt IDA8SF27_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4Q21_RS07290Primary locus identifier stored in the genes table.
Old locus tagC4Q21_07290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP030777.1Sequence record reported by the local genomic context database.
Genomic interval1 496 926-1 497 612 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 496 926-1 498 958 ntGCF_003312465::NZ_CP030777.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003312465::NZ_CP030777.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP030777.1All displayed genes belong to this local TCS context.
Neighborhood span1 496 926-1 498 958 nt2 033 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 496 926 nt1 498 958 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C4Q21_RS07290GCF_003312465#C4Q21_RS07290
RROmpRCurrent focus
1 496 926-1 497 612 nt · Forward (+)
C4Q21_RS07295GCF_003312465#C4Q21_RS07295
HKClassic
1 497 609-1 498 958 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154385#FAEPRAM212_RS10795Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1302089
Simplified PFAM architecture for RROC_1302089
PFAM domain coverage: 185 / 228 aa (81.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-113] | Trans_reg_C[148-220]
- Domain count: 2
- Matched identifier: RROC_1302089
- Positioned domains: Response_reg 2-113 ; Response_reg 2-113 ; Trans_reg_C 148-220 ; Trans_reg_C 148-220
Cluster members and taxonomy
Representative gene: GCF_000154385#FAEPRAM212_RS10795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_003312465
AssemblyASM331246v1 · Complete Genomehaploid
Genome composition2 970 937 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 51 · HK 24 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key