1 Response_reg#1
9-121 aa · 113 aa · 87.6% of protein
Raw token
Response_reg:9:9.2e-38:121:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DUK75_RS01930
Response regulator, CheY family
Escherichia coli · GCF_003301175
ClassRRTypeCheYLength129 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003301175#DUK75_RS01930Stable P2CS identifier used across views.
GenomeGCF_003301175Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length129 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 129 aa (87.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa129 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:9:9.2e-38:121:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003301175::NZ_BGTN01000002.1::G00005
Group size22 locus tags listed below.
HK / RR0 / 2Counts resolved for the local TCS neighborhood.
Context span133311-134764Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_003301175::NZ_BGTN01000002.1::G00005Context members
DUK75_RS01925DUK75_RS01930
Partner locus tags
DUK75_RS01925DUK75_RS01930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000763860.1Primary protein accession used for annex mappings.
UniProt accessionB7MW75Primary UniProt accession resolved in the annex database.
UniProt IDB7MW75_ECO81Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDUK75_RS01930Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BGTN01000002.1Sequence record reported by the local genomic context database.
Genomic interval134 375-134 764 nt390 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span133 311-134 764 ntGCF_003301175::NZ_BGTN01000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003301175::NZ_BGTN01000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BGTN01000002.1All displayed genes belong to this local TCS context.
Neighborhood span133 311-134 764 nt1 454 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
133 311 nt134 764 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DUK75_RS01925GCF_003301175#DUK75_RS01925
RRCheB
133 311-134 360 nt · Forward (+)
DUK75_RS01930GCF_003301175#DUK75_RS01930
RRCheYCurrent focus
134 375-134 764 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007445#C_RS10875Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2329234
Simplified PFAM architecture for RROC_2329234
PFAM domain coverage: 112 / 129 aa (86.8%)
1 aa129 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[9-120]
- Domain count: 1
- Matched identifier: RROC_2329234
- Positioned domains: Response_reg 9-120 ; Response_reg 9-120
Cluster members and taxonomy
Representative gene: GCF_000007445#C_RS10875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 562 · GCF_003301175
AssemblyASM330117v1 · Contighaploid
Genome composition5 279 839 bp · 50,5% GCEscherichia coli
Signal transduction countsGenes 64 · HK 32 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key