1 HAMP#1
164-233 aa · 70 aa · 14.3% of protein
Raw token
HAMP:164:0.00000000000000167:233:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5P42_RS19585
Histidine kinase, Classic
Bacillus sp. SRB_331 · GCF_003264175
ClassHKTypeClassicLength490 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003264175#B5P42_RS19585Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length490 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 490 aa (48.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa490 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-323 aa · 66 aa · 13.5% of protein
Raw token
HisKA:258:0.0000000000000372:323:66:643 HATPase_c#3
369-469 aa · 101 aa · 20.6% of protein
Raw token
HATPase_c:369:6.91e-17:469:101:109- Raw architecture: HAMP:164:0.00000000000000167:233:70:69#HisKA:258:0.0000000000000372:323:66:64#HATPase_c:369:6.91e-17:469:101:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003264175::NZ_NADV01000029.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span228744-230874Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB5P42_19425RefSeq proteinWP_088033785.1
Context group ID
GCF_003264175::NZ_NADV01000029.1::G00030Context members
B5P42_RS19580B5P42_RS19585
Partner locus tags
B5P42_RS19580B5P42_RS19585
Partner old locus tags
B5P42_19420B5P42_19425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_088033785.1Primary protein accession used for annex mappings.
UniProt accessionA0A243A879Primary UniProt accession resolved in the annex database.
UniProt IDA0A243A879_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5P42_RS19585Primary locus identifier stored in the genes table.
Old locus tagB5P42_19425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NADV01000029.1Sequence record reported by the local genomic context database.
Genomic interval229 402-230 874 nt1 473 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span228 744-230 874 ntGCF_003264175::NZ_NADV01000029.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003264175::NZ_NADV01000029.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NADV01000029.1All displayed genes belong to this local TCS context.
Neighborhood span228 744-230 874 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
228 744 nt230 874 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B5P42_RS19580GCF_003264175#B5P42_RS19580
RROmpR
228 744-229 409 nt · Forward (+)
B5P42_RS19585GCF_003264175#B5P42_RS19585
HKClassicCurrent focus
229 402-230 874 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002146725#BK732_RS22005Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1534829
Simplified PFAM architecture for HKOC_1534829
PFAM domain coverage: 226 / 490 aa (46.1%)
1 aa490 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-233] | HisKA[259-323] | HATPase_c[370-477]
- Domain count: 3
- Matched identifier: HKOC_1534829
- Positioned domains: HAMP 181-233 ; HisKA 259-323 ; HATPase_c 370-477
Cluster members and taxonomy
Representative gene: GCF_002146725#BK732_RS22005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 969 379 · GCF_003264175
AssemblyASM326417v1 · Scaffoldhaploid
Genome composition6 087 768 bp · 35,0% GCBacillus sp. SRB_331
Signal transduction countsGenes 124 · HK 68 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key