1 HAMP#1
171-241 aa · 71 aa · 15.1% of protein
Raw token
HAMP:171:0.000000000272:241:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5P42_RS19240
Histidine kinase, Classic
Bacillus sp. SRB_331 · GCF_003264175
ClassHKTypeClassicLength471 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003264175#B5P42_RS19240Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length471 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 471 aa (52.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa471 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-312 aa · 68 aa · 14.4% of protein
Raw token
HisKA:245:1.18e-16:312:68:643 HATPase_c#3
362-470 aa · 109 aa · 23.1% of protein
Raw token
HATPase_c:362:1.16e-26:470:109:109- Raw architecture: HAMP:171:0.000000000272:241:71:69#HisKA:245:1.18e-16:312:68:64#HATPase_c:362:1.16e-26:470:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003264175::NZ_NADV01000029.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span166967-169053Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB5P42_19085RefSeq proteinWP_113734953.1
Context group ID
GCF_003264175::NZ_NADV01000029.1::G00029Context members
B5P42_RS19235B5P42_RS19240
Partner locus tags
B5P42_RS19235B5P42_RS19240
Partner old locus tags
B5P42_19080B5P42_19085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_113734953.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5P42_RS19240Primary locus identifier stored in the genes table.
Old locus tagB5P42_19085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NADV01000029.1Sequence record reported by the local genomic context database.
Genomic interval167 638-169 053 nt1 416 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span166 967-169 053 ntGCF_003264175::NZ_NADV01000029.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003264175::NZ_NADV01000029.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NADV01000029.1All displayed genes belong to this local TCS context.
Neighborhood span166 967-169 053 nt2 087 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
166 967 nt169 053 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B5P42_RS19235GCF_003264175#B5P42_RS19235
RROmpR
166 967-167 641 nt · Forward (+)
B5P42_RS19240GCF_003264175#B5P42_RS19240
HKClassicCurrent focus
167 638-169 053 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003264175#B5P42_RS19240The current gene is the representative for this cluster.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1709451
Simplified PFAM architecture for HKOC_1709451
PFAM domain coverage: 352 / 471 aa (74.7%)
1 aa471 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[42-165] | HAMP[188-240] | HisKA[246-312] | HATPase_c[362-469]
- Domain count: 4
- Matched identifier: HKOC_1709451
- Positioned domains: ArlS_N 42-165 ; HAMP 188-240 ; HisKA 246-312 ; HATPase_c 362-469
Cluster members and taxonomy
Representative gene: GCF_003264175#B5P42_RS19240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 969 379 · GCF_003264175
AssemblyASM326417v1 · Scaffoldhaploid
Genome composition6 087 768 bp · 35,0% GCBacillus sp. SRB_331
Signal transduction countsGenes 124 · HK 68 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key