1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:3.86e-35:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5P42_RS08585
Response regulator OmpR family
Bacillus sp. SRB_331 · GCF_003264175
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003264175#B5P42_RS08585Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 229 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-225 aa · 74 aa · 32.3% of protein
Raw token
Trans_reg_C:152:1.78e-28:225:77:77- Raw architecture: Response_reg:5:3.86e-35:114:111:111#Trans_reg_C:152:1.78e-28:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003264175::NZ_NADV01000011.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11301-13861Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB5P42_08515RefSeq proteinWP_113734033.1
Context group ID
GCF_003264175::NZ_NADV01000011.1::G00002Context members
B5P42_RS08585B5P42_RS08590
Partner locus tags
B5P42_RS08585B5P42_RS08590
Partner old locus tags
B5P42_08515B5P42_08520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_113734033.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5P42_RS08585Primary locus identifier stored in the genes table.
Old locus tagB5P42_08515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NADV01000011.1Sequence record reported by the local genomic context database.
Genomic interval11 301-11 990 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 301-13 861 ntGCF_003264175::NZ_NADV01000011.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003264175::NZ_NADV01000011.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NADV01000011.1All displayed genes belong to this local TCS context.
Neighborhood span11 301-13 861 nt2 561 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 301 nt13 861 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B5P42_RS08585GCF_003264175#B5P42_RS08585
RROmpRCurrent focus
11 301-11 990 nt · Forward (+)
B5P42_RS08590GCF_003264175#B5P42_RS08590
HKClassic
11 987-13 861 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003264175#B5P42_RS08585The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1260370
Simplified PFAM architecture for RROC_1260370
PFAM domain coverage: 182 / 229 aa (79.5%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[153-225]
- Domain count: 2
- Matched identifier: RROC_1260370
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 153-225 ; Trans_reg_C 153-225
Cluster members and taxonomy
Representative gene: GCF_003264175#B5P42_RS08585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 969 379 · GCF_003264175
AssemblyASM326417v1 · Scaffoldhaploid
Genome composition6 087 768 bp · 35,0% GCBacillus sp. SRB_331
Signal transduction countsGenes 124 · HK 68 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key