1 PAS_4#1
234-310 aa · 77 aa · 9.6% of protein
Raw token
PAS_4:234:0.000000882:310:81:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B5P42_RS02260
Histidine kinase, Classic
Bacillus sp. SRB_331 · GCF_003264175
ClassHKTypeClassicLength801 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003264175#B5P42_RS02260Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_4HisKAHATPase_c
Protein length801 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage455 / 801 aa (56.8%)Merged over positioned domains only.
Domain description3 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation5 items
2 PAS_4#2
332-437 aa · 106 aa · 13.2% of protein
Raw token
PAS_4:332:4.03e-19:437:107:1103 PAS_4#3
461-570 aa · 110 aa · 13.7% of protein
Raw token
PAS_4:461:0.000000000532:570:113:1104 HisKA#4
587-647 aa · 61 aa · 7.6% of protein
Raw token
HisKA:587:0.000000000000978:647:61:645 HATPase_c#5
695-795 aa · 101 aa · 12.6% of protein
Raw token
HATPase_c:695:2.33e-26:795:104:109- Raw architecture: PAS_4:234:0.000000882:310:81:110#PAS_4:332:4.03e-19:437:107:110#PAS_4:461:0.000000000532:570:113:110#HisKA:587:0.000000000000978:647:61:64#HATPase_c:695:2.33e-26:795:104:109
- Domain description: 3 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003264175::NZ_NADV01000003.1::G00035
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span96198-98603Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB5P42_02230RefSeq proteinWP_088030856.1
Context group ID
GCF_003264175::NZ_NADV01000003.1::G00035Context members
B5P42_RS02260
Partner locus tags
B5P42_RS02260
Partner old locus tags
B5P42_02230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_088030856.1Primary protein accession used for annex mappings.
UniProt accessionA0A243AR18Primary UniProt accession resolved in the annex database.
UniProt IDA0A243AR18_BACTUDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB5P42_RS02260Primary locus identifier stored in the genes table.
Old locus tagB5P42_02230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NADV01000003.1Sequence record reported by the local genomic context database.
Genomic interval96 198-98 603 nt2 406 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span96 198-98 603 ntGCF_003264175::NZ_NADV01000003.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003264175::NZ_NADV01000003.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NADV01000003.1All displayed genes belong to this local TCS context.
Neighborhood span96 198-98 603 nt2 406 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 198 nt98 603 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B5P42_RS02260GCF_003264175#B5P42_RS02260
HKClassicCurrent focus
96 198-98 603 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002146725#BK732_RS01830Use this link to inspect the representative gene detail.
PFAM architecturePAS_4 + PAS_4 + PAS_9 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0554542
Simplified PFAM architecture for HKOC_0554542
PFAM domain coverage: 449 / 801 aa (56.1%)
1 aa801 aa
PAS_4PAS_4PAS_9HisKAHATPase_c
- Simplified architecture: PAS_4 + PAS_4 + PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_4[230-310] | PAS_4[331-437] | PAS_9[472-569] | HisKA[587-646] | HATPase_c[694-796]
- Domain count: 5
- Matched identifier: HKOC_0554542
- Positioned domains: PAS_4 230-310 ; PAS_4 331-437 ; PAS_9 472-569 ; HisKA 587-646 ; HATPase_c 694-796
Cluster members and taxonomy
Representative gene: GCF_002146725#BK732_RS01830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 969 379 · GCF_003264175
AssemblyASM326417v1 · Scaffoldhaploid
Genome composition6 087 768 bp · 35,0% GCBacillus sp. SRB_331
Signal transduction countsGenes 124 · HK 68 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key