1 HAMP#1
300-372 aa · 73 aa · 12.2% of protein
Raw token
HAMP:300:0.00000000000456:372:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DMI82_RS10340
Histidine kinase, Classic
Blautia sp. BCRC 81119 · GCF_003184505
ClassHKTypeClassicLength600 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003184505#DMI82_RS10340Stable P2CS identifier used across views.
GenomeGCF_003184505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length600 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage212 / 600 aa (35.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa600 aa
Domain-by-domain annotation3 items
2 His_kinase#2
387-466 aa · 80 aa · 13.3% of protein
Raw token
His_kinase:387:1.26e-29:466:80:803 HATPase_c#3
478-536 aa · 59 aa · 9.8% of protein
Raw token
HATPase_c:478:0.000000599:536:59:109- Raw architecture: HAMP:300:0.00000000000456:372:73:69#His_kinase:387:1.26e-29:466:80:80#HATPase_c:478:0.000000599:536:59:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003184505::NZ_QJHD01000014.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span89961-92535Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDMI82_10345RefSeq proteinWP_110103236.1
Context group ID
GCF_003184505::NZ_QJHD01000014.1::G00008Context members
DMI82_RS10340DMI82_RS10345
Partner locus tags
DMI82_RS10340DMI82_RS10345
Partner old locus tags
DMI82_10345DMI82_10350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_110103236.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDMI82_RS10340Primary locus identifier stored in the genes table.
Old locus tagDMI82_10345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QJHD01000014.1Sequence record reported by the local genomic context database.
Genomic interval89 961-91 763 nt1 803 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span89 961-92 535 ntGCF_003184505::NZ_QJHD01000014.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003184505::NZ_QJHD01000014.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QJHD01000014.1All displayed genes belong to this local TCS context.
Neighborhood span89 961-92 535 nt2 575 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
89 961 nt92 535 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DMI82_RS10340GCF_003184505#DMI82_RS10340
HKClassicCurrent focus
89 961-91 763 nt · Forward (+)
DMI82_RS10345GCF_003184505#DMI82_RS10345
RRunclassified
91 768-92 535 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003184505#DMI82_RS10340The current gene is the representative for this cluster.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1053525
Simplified PFAM architecture for HKOC_1053525
PFAM domain coverage: 77 / 600 aa (12.8%)
1 aa600 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[389-465]
- Domain count: 1
- Matched identifier: HKOC_1053525
- Positioned domains: His_kinase 389-465
Cluster members and taxonomy
Representative gene: GCF_003184505#DMI82_RS10340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 212 480 · GCF_003184505
AssemblyASM318450v1 · Contighaploid
Genome composition4 097 535 bp · 44,0% GCBlautia sp. BCRC 81119
Signal transduction countsGenes 83 · HK 40 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key