1 Response_reg#1
5-112 aa · 108 aa · 49.1% of protein
Raw token
Response_reg:5:4.83e-35:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DMI82_RS06940
Response regulator OmpR family
Blautia sp. BCRC 81119 · GCF_003184505
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003184505#DMI82_RS06940Stable P2CS identifier used across views.
GenomeGCF_003184505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 220 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.6% of protein
Raw token
Trans_reg_C:146:1.16e-24:219:76:77- Raw architecture: Response_reg:5:4.83e-35:112:110:111#Trans_reg_C:146:1.16e-24:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003184505::NZ_QJHD01000008.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span126518-128535Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDMI82_06945RefSeq proteinWP_008705326.1
Context group ID
GCF_003184505::NZ_QJHD01000008.1::G00046Context members
DMI82_RS06935DMI82_RS06940
Partner locus tags
DMI82_RS06935DMI82_RS06940
Partner old locus tags
DMI82_06940DMI82_06945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008705326.1Primary protein accession used for annex mappings.
UniProt accessionA0A564WPU2Primary UniProt accession resolved in the annex database.
UniProt IDA0A564WPU2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDMI82_RS06940Primary locus identifier stored in the genes table.
Old locus tagDMI82_06945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QJHD01000008.1Sequence record reported by the local genomic context database.
Genomic interval127 873-128 535 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span126 518-128 535 ntGCF_003184505::NZ_QJHD01000008.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003184505::NZ_QJHD01000008.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QJHD01000008.1All displayed genes belong to this local TCS context.
Neighborhood span126 518-128 535 nt2 018 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
126 518 nt128 535 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DMI82_RS06935GCF_003184505#DMI82_RS06935
HKClassic
126 518-127 882 nt · Reverse (-)
DMI82_RS06940GCF_003184505#DMI82_RS06940
RROmpRCurrent focus
127 873-128 535 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003184505#DMI82_RS06940The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1731694
Simplified PFAM architecture for RROC_1731694
PFAM domain coverage: 180 / 220 aa (81.8%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-111] | Trans_reg_C[146-218]
- Domain count: 2
- Matched identifier: RROC_1731694
- Positioned domains: Response_reg 5-111 ; Response_reg 5-111 ; Trans_reg_C 146-218 ; Trans_reg_C 146-218
Cluster members and taxonomy
Representative gene: GCF_003184505#DMI82_RS06940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 212 480 · GCF_003184505
AssemblyASM318450v1 · Contighaploid
Genome composition4 097 535 bp · 44,0% GCBlautia sp. BCRC 81119
Signal transduction countsGenes 83 · HK 40 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key