1 Response_reg#1
2-114 aa · 113 aa · 50.4% of protein
Raw token
Response_reg:2:1.19e-31:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DMI82_RS06450
Response regulator OmpR family
Blautia sp. BCRC 81119 · GCF_003184505
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003184505#DMI82_RS06450Stable P2CS identifier used across views.
GenomeGCF_003184505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 224 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-220 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:147:1.37e-34:220:77:77- Raw architecture: Response_reg:2:1.19e-31:114:113:111#Trans_reg_C:147:1.37e-34:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003184505::NZ_QJHD01000008.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16839-18865Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDMI82_06455RefSeq proteinWP_044961949.1
Context group ID
GCF_003184505::NZ_QJHD01000008.1::G00041Context members
DMI82_RS06450DMI82_RS06455
Partner locus tags
DMI82_RS06450DMI82_RS06455
Partner old locus tags
DMI82_06455DMI82_06460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_044961949.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L8TB65Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L8TB65_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDMI82_RS06450Primary locus identifier stored in the genes table.
Old locus tagDMI82_06455Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QJHD01000008.1Sequence record reported by the local genomic context database.
Genomic interval16 839-17 513 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 839-18 865 ntGCF_003184505::NZ_QJHD01000008.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003184505::NZ_QJHD01000008.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QJHD01000008.1All displayed genes belong to this local TCS context.
Neighborhood span16 839-18 865 nt2 027 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 839 nt18 865 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DMI82_RS06450GCF_003184505#DMI82_RS06450
RROmpRCurrent focus
16 839-17 513 nt · Forward (+)
DMI82_RS06455GCF_003184505#DMI82_RS06455
HKClassic
17 510-18 865 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209835#CK1_RS16850Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1529656
Simplified PFAM architecture for RROC_1529656
PFAM domain coverage: 185 / 224 aa (82.6%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-113] | Trans_reg_C[148-220]
- Domain count: 2
- Matched identifier: RROC_1529656
- Positioned domains: Response_reg 2-113 ; Response_reg 2-113 ; Trans_reg_C 148-220 ; Trans_reg_C 148-220
Cluster members and taxonomy
Representative gene: GCF_000209835#CK1_RS16850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 212 480 · GCF_003184505
AssemblyASM318450v1 · Contighaploid
Genome composition4 097 535 bp · 44,0% GCBlautia sp. BCRC 81119
Signal transduction countsGenes 83 · HK 40 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key