1 SBP_bac_3#1
44-260 aa · 217 aa · 22.8% of protein
Raw token
SBP_bac_3:44:5.43e-32:260:227:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DMI82_RS00220
Histidine kinase, Hybrid
Blautia sp. BCRC 81119 · GCF_003184505
ClassHKTypeHybridLength951 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_003184505#DMI82_RS00220Stable P2CS identifier used across views.
GenomeGCF_003184505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length951 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage728 / 951 aa (76.6%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa951 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
282-486 aa · 205 aa · 21.6% of protein
Raw token
SBP_bac_3:282:0.000000000000828:486:226:2243 HisKA#3
571-639 aa · 69 aa · 7.3% of protein
Raw token
HisKA:571:2.02e-19:639:69:644 HATPase_c#4
685-803 aa · 119 aa · 12.5% of protein
Raw token
HATPase_c:685:2.26e-29:803:119:1095 Response_reg#5
829-946 aa · 118 aa · 12.4% of protein
Raw token
Response_reg:829:2.51e-27:946:118:111- Raw architecture: SBP_bac_3:44:5.43e-32:260:227:224#SBP_bac_3:282:0.000000000000828:486:226:224#HisKA:571:2.02e-19:639:69:64#HATPase_c:685:2.26e-29:803:119:109#Response_reg:829:2.51e-27:946:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_003184505::NZ_QJHD01000001.1::G00016
Group size44 locus tags listed below.
HK / RR3 / 1Counts resolved for the local TCS neighborhood.
Context span41001-51268Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDMI82_00220RefSeq proteinWP_110101989.1
Context group ID
GCF_003184505::NZ_QJHD01000001.1::G00016Context members
DMI82_RS00215DMI82_RS00220DMI82_RS00230DMI82_RS00240
Partner locus tags
DMI82_RS00215DMI82_RS00220DMI82_RS00230DMI82_RS00240
Partner old locus tags
DMI82_00215DMI82_00220DMI82_00230DMI82_00240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_110101989.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDMI82_RS00220Primary locus identifier stored in the genes table.
Old locus tagDMI82_00220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QJHD01000001.1Sequence record reported by the local genomic context database.
Genomic interval44 011-46 866 nt2 856 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span41 001-51 268 ntGCF_003184505::NZ_QJHD01000001.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003184505::NZ_QJHD01000001.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QJHD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span41 001-51 268 nt10 268 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 001 nt51 268 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
DMI82_RS00215GCF_003184505#DMI82_RS00215
HKHybrid
41 001-43 832 nt · Reverse (-)
DMI82_RS00220GCF_003184505#DMI82_RS00220
HKHybridCurrent focus
44 011-46 866 nt · Reverse (-)
DMI82_RS00230GCF_003184505#DMI82_RS00230
RRRpfG
47 114-48 613 nt · Reverse (-)
DMI82_RS00240GCF_003184505#DMI82_RS00240
HKHybrid
49 082-51 268 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003184505#DMI82_RS00220The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0325677
Simplified PFAM architecture for HKOC_0325677
PFAM domain coverage: 519 / 951 aa (54.6%)
1 aa951 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[45-261] | HisKA[571-639] | HATPase_c[686-801] | Response_reg[829-945]
- Domain count: 4
- Matched identifier: HKOC_0325677
- Positioned domains: SBP_bac_3 45-261 ; HisKA 571-639 ; HATPase_c 686-801 ; Response_reg 829-945
Cluster members and taxonomy
Representative gene: GCF_003184505#DMI82_RS00220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 212 480 · GCF_003184505
AssemblyASM318450v1 · Contighaploid
Genome composition4 097 535 bp · 44,0% GCBlautia sp. BCRC 81119
Signal transduction countsGenes 83 · HK 40 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key