1 HisKA_3#1
210-271 aa · 62 aa · 14.5% of protein
Raw token
HisKA_3:210:0.00000000000111:271:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CWE05_RS10655
Histidine kinase, Classic
Bifidobacterium longum · GCF_003130775
ClassHKTypeClassicLength429 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003130775#CWE05_RS10655Stable P2CS identifier used across views.
GenomeGCF_003130775Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length429 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 429 aa (34.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa429 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
330-414 aa · 85 aa · 19.8% of protein
Raw token
HATPase_c:330:0.000000000408:414:98:109- Raw architecture: HisKA_3:210:0.00000000000111:271:65:68#HATPase_c:330:0.000000000408:414:98:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003130775::NZ_PHUM01000024.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5016-6981Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCWE05_10640RefSeq proteinWP_014483693.1
Context group ID
GCF_003130775::NZ_PHUM01000024.1::G00003Context members
CWE05_RS10655CWE05_RS10660
Partner locus tags
CWE05_RS10655CWE05_RS10660
Partner old locus tags
CWE05_10640CWE05_10645
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_014483693.1Primary protein accession used for annex mappings.
UniProt accessionA0A2U2RQD7Primary UniProt accession resolved in the annex database.
UniProt IDA0A2U2RQD7_BIFLNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCWE05_RS10655Primary locus identifier stored in the genes table.
Old locus tagCWE05_10640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PHUM01000024.1Sequence record reported by the local genomic context database.
Genomic interval5 016-6 305 nt1 290 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 016-6 981 ntGCF_003130775::NZ_PHUM01000024.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003130775::NZ_PHUM01000024.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PHUM01000024.1All displayed genes belong to this local TCS context.
Neighborhood span5 016-6 981 nt1 966 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 016 nt6 981 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CWE05_RS10655GCF_003130775#CWE05_RS10655
HKClassicCurrent focus
5 016-6 305 nt · Forward (+)
CWE05_RS10660GCF_003130775#CWE05_RS10660
RRNarL
6 298-6 981 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000158015#BIFBRE_RS04005Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2180287
Simplified PFAM architecture for HKOC_2180287
PFAM domain coverage: 155 / 429 aa (36.1%)
1 aa429 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[213-274] | HATPase_c[324-416]
- Domain count: 2
- Matched identifier: HKOC_2180287
- Positioned domains: HisKA_3 213-274 ; HATPase_c 324-416
Cluster members and taxonomy
Representative gene: GCF_000158015#BIFBRE_RS04005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003130775
AssemblyASM313077v1 · Contighaploid
Genome composition2 392 556 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key