1 HisKA#1
259-325 aa · 67 aa · 13.5% of protein
Raw token
HisKA:259:0.000000000000767:325:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CWE05_RS07040
Histidine kinase, Classic
Bifidobacterium longum · GCF_003130775
ClassHKTypeClassicLength498 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003130775#CWE05_RS07040Stable P2CS identifier used across views.
GenomeGCF_003130775Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length498 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 498 aa (35.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa498 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
388-498 aa · 111 aa · 22.3% of protein
Raw token
HATPase_c:388:8.39e-17:498:111:109- Raw architecture: HisKA:259:0.000000000000767:325:67:64#HATPase_c:388:8.39e-17:498:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003130775::NZ_PHUM01000007.1::G00014
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span56215-57711Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCWE05_07020RefSeq proteinWP_258305267.1
Context group ID
GCF_003130775::NZ_PHUM01000007.1::G00014Context members
CWE05_RS07040
Partner locus tags
CWE05_RS07040
Partner old locus tags
CWE05_07020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_258305267.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCWE05_RS07040Primary locus identifier stored in the genes table.
Old locus tagCWE05_07020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PHUM01000007.1Sequence record reported by the local genomic context database.
Genomic interval56 215-57 711 nt1 497 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span56 215-57 711 ntGCF_003130775::NZ_PHUM01000007.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003130775::NZ_PHUM01000007.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PHUM01000007.1All displayed genes belong to this local TCS context.
Neighborhood span56 215-57 711 nt1 497 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
56 215 nt57 711 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CWE05_RS07040GCF_003130775#CWE05_RS07040
HKClassicCurrent focus
56 215-57 711 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003130775#CWE05_RS07040The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1488337
Simplified PFAM architecture for HKOC_1488337
PFAM domain coverage: 168 / 498 aa (33.7%)
1 aa498 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[260-325] | HATPase_c[389-490]
- Domain count: 2
- Matched identifier: HKOC_1488337
- Positioned domains: HisKA 260-325 ; HATPase_c 389-490
Cluster members and taxonomy
Representative gene: GCF_003130775#CWE05_RS07040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003130775
AssemblyASM313077v1 · Contighaploid
Genome composition2 392 556 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key