1 Response_reg#1
13-108 aa · 96 aa · 41.7% of protein
Raw token
Response_reg:13:0.0000000000101:108:96:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CWE05_RS01450
Response regulator NarL family
Bifidobacterium longum · GCF_003130775
ClassRRTypeNarLLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003130775#CWE05_RS01450Stable P2CS identifier used across views.
GenomeGCF_003130775Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 230 aa (65.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
169-223 aa · 55 aa · 23.9% of protein
Raw token
HTH_LUXR:169:1.43e-16:223:55:58- Raw architecture: Response_reg:13:0.0000000000101:108:96:111#HTH_LUXR:169:1.43e-16:223:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003130775::NZ_PHUM01000002.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span27100-27792Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCWE05_01450RefSeq proteinWP_109087362.1
Context group ID
GCF_003130775::NZ_PHUM01000002.1::G00004Context members
CWE05_RS01450
Partner locus tags
CWE05_RS01450
Partner old locus tags
CWE05_01450
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_109087362.1Primary protein accession used for annex mappings.
UniProt accessionA0A2U2RU83Primary UniProt accession resolved in the annex database.
UniProt IDA0A2U2RU83_BIFLNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCWE05_RS01450Primary locus identifier stored in the genes table.
Old locus tagCWE05_01450Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PHUM01000002.1Sequence record reported by the local genomic context database.
Genomic interval27 100-27 792 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span27 100-27 792 ntGCF_003130775::NZ_PHUM01000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003130775::NZ_PHUM01000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PHUM01000002.1All displayed genes belong to this local TCS context.
Neighborhood span27 100-27 792 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 100 nt27 792 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CWE05_RS01450GCF_003130775#CWE05_RS01450
RRNarLCurrent focus
27 100-27 792 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003130775#CWE05_RS01450The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1210437
Simplified PFAM architecture for RROC_1210437
PFAM domain coverage: 152 / 230 aa (66.1%)
1 aa230 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[12-110] | GerE[170-222]
- Domain count: 2
- Matched identifier: RROC_1210437
- Positioned domains: Response_reg 12-110 ; Response_reg 12-110 ; GerE 170-222 ; GerE 170-222
Cluster members and taxonomy
Representative gene: GCF_003130775#CWE05_RS01450
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 15 over 15 total members. Page 1 / 1.
GCF_003130775#CWE05_RS01450 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003130775
AssemblyASM313077v1 · Contighaploid
Genome composition2 392 556 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key