1 HisKA_3#1
215-278 aa · 64 aa · 14.2% of protein
Raw token
HisKA_3:215:0.0000000000000219:278:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DD700_RS07400
Histidine kinase, Classic
Bifidobacterium breve · GCF_003095095
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003095095#DD700_RS07400Stable P2CS identifier used across views.
GenomeGCF_003095095Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 450 aa (40.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
325-443 aa · 119 aa · 26.4% of protein
Raw token
HATPase_c:325:0.0000000867:443:120:109- Raw architecture: HisKA_3:215:0.0000000000000219:278:64:68#HATPase_c:325:0.0000000867:443:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003095095::NZ_QDIS01000004.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span275633-277638Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDD700_07395RefSeq proteinWP_003829177.1
Context group ID
GCF_003095095::NZ_QDIS01000004.1::G00013Context members
DD700_RS07400DD700_RS07405
Partner locus tags
DD700_RS07400DD700_RS07405
Partner old locus tags
DD700_07395DD700_07400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003829177.1Primary protein accession used for annex mappings.
UniProt accessionD4BP44Primary UniProt accession resolved in the annex database.
UniProt IDD4BP44_BIFBRDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDD700_RS07400Primary locus identifier stored in the genes table.
Old locus tagDD700_07395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QDIS01000004.1Sequence record reported by the local genomic context database.
Genomic interval275 633-276 985 nt1 353 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span275 633-277 638 ntGCF_003095095::NZ_QDIS01000004.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003095095::NZ_QDIS01000004.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QDIS01000004.1All displayed genes belong to this local TCS context.
Neighborhood span275 633-277 638 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
275 633 nt277 638 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DD700_RS07400GCF_003095095#DD700_RS07400
HKClassicCurrent focus
275 633-276 985 nt · Forward (+)
DD700_RS07405GCF_003095095#DD700_RS07405
RRNarL
276 985-277 638 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007525#BL_RS03045Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1962050
Simplified PFAM architecture for HKOC_1962050
PFAM domain coverage: 66 / 450 aa (14.7%)
1 aa450 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[215-280]
- Domain count: 1
- Matched identifier: HKOC_1962050
- Positioned domains: HisKA_3 215-280
Cluster members and taxonomy
Representative gene: GCF_000007525#BL_RS03045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_003095095
AssemblyASM309509v1 · Contighaploid
Genome composition2 260 680 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 27 · HK 10 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key