1 Response_reg#1
27-138 aa · 112 aa · 50.0% of protein
Raw token
Response_reg:27:5.22e-29:138:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DD705_RS09420
Response regulator NarL family
Bifidobacterium longum · GCF_003094955
ClassRRTypeNarLLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003094955#DD705_RS09420Stable P2CS identifier used across views.
GenomeGCF_003094955Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 224 aa (71.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
176-222 aa · 47 aa · 21.0% of protein
Raw token
HTH_LUXR:176:0.0000000108:222:47:58- Raw architecture: Response_reg:27:5.22e-29:138:112:111#HTH_LUXR:176:0.0000000108:222:47:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003094955::NZ_QDIW01000081.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-1939Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDD705_09420RefSeq proteinWP_133240733.1
Context group ID
GCF_003094955::NZ_QDIW01000081.1::G00011Context members
DD705_RS09420DD705_RS09425
Partner locus tags
DD705_RS09420DD705_RS09425
Partner old locus tags
DD705_09420DD705_09425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_133240733.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDD705_RS09420Primary locus identifier stored in the genes table.
Old locus tagDD705_09420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QDIW01000081.1Sequence record reported by the local genomic context database.
Genomic interval1-672 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-1 939 ntGCF_003094955::NZ_QDIW01000081.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003094955::NZ_QDIW01000081.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QDIW01000081.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 939 nt1 939 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 939 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DD705_RS09420GCF_003094955#DD705_RS09420
RRNarLCurrent focus
1-672 nt · Reverse (-)
DD705_RS09425GCF_003094955#DD705_RS09425
HKClassic
707-1 939 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003094955#DD705_RS09420The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1542140
Simplified PFAM architecture for RROC_1542140
PFAM domain coverage: 114 / 224 aa (50.9%)
1 aa224 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[25-138]
- Domain count: 1
- Matched identifier: RROC_1542140
- Positioned domains: Response_reg 25-138 ; Response_reg 25-138
Cluster members and taxonomy
Representative gene: GCF_003094955#DD705_RS09420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003094955
AssemblyASM309495v1 · Contighaploid
Genome composition2 417 279 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key