1 HisKA_3#1
242-304 aa · 63 aa · 7.2% of protein
Raw token
HisKA_3:242:2.07e-18:304:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DD701_RS03695
Histidine kinase, Classic
Bifidobacterium longum · GCF_003094855
ClassHKTypeClassicLength869 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003094855#DD701_RS03695Stable P2CS identifier used across views.
GenomeGCF_003094855Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length869 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 869 aa (17.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa869 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
353-439 aa · 87 aa · 10.0% of protein
Raw token
HATPase_c:353:0.000000000000751:439:104:109- Raw architecture: HisKA_3:242:2.07e-18:304:63:68#HATPase_c:353:0.000000000000751:439:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003094855::NZ_QDIQ01000002.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span307651-311082Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDD701_03705RefSeq proteinWP_165502120.1
Context group ID
GCF_003094855::NZ_QDIQ01000002.1::G00005Context members
DD701_RS03690DD701_RS03695
Partner locus tags
DD701_RS03690DD701_RS03695
Partner old locus tags
DD701_03700DD701_03705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_165502120.1Primary protein accession used for annex mappings.
UniProt accessionA0ABD7WMQ9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABD7WMQ9_BIFLLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDD701_RS03695Primary locus identifier stored in the genes table.
Old locus tagDD701_03705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QDIQ01000002.1Sequence record reported by the local genomic context database.
Genomic interval308 473-311 082 nt2 610 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span307 651-311 082 ntGCF_003094855::NZ_QDIQ01000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003094855::NZ_QDIQ01000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QDIQ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span307 651-311 082 nt3 432 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
307 651 nt311 082 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DD701_RS03690GCF_003094855#DD701_RS03690
RRNarL
307 651-308 397 nt · Reverse (-)
DD701_RS03695GCF_003094855#DD701_RS03695
HKClassicCurrent focus
308 473-311 082 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003094635#DD678_RS06055Use this link to inspect the representative gene detail.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0459730
Simplified PFAM architecture for HKOC_0459730
PFAM domain coverage: 428 / 869 aa (49.3%)
1 aa869 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[10-147] | HisKA_3[242-304] | HATPase_c[353-440] | DUF7134[554-692]
- Domain count: 4
- Matched identifier: HKOC_0459730
- Positioned domains: DUF7134 10-147 ; HisKA_3 242-304 ; HATPase_c 353-440 ; DUF7134 554-692
Cluster members and taxonomy
Representative gene: GCF_003094635#DD678_RS06055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003094855
AssemblyASM309485v1 · Contighaploid
Genome composition2 398 181 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key