1 HisKA_3#1
215-278 aa · 64 aa · 14.2% of protein
Raw token
HisKA_3:215:0.0000000000000219:278:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DD678_RS06225
Histidine kinase, Classic
Bifidobacterium longum · GCF_003094635
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003094635#DD678_RS06225Stable P2CS identifier used across views.
GenomeGCF_003094635Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 450 aa (40.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
325-443 aa · 119 aa · 26.4% of protein
Raw token
HATPase_c:325:0.0000000867:443:120:109- Raw architecture: HisKA_3:215:0.0000000000000219:278:64:68#HATPase_c:325:0.0000000867:443:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003094635::NZ_QDIF01000003.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span345873-347878Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDD678_06210RefSeq proteinWP_003829177.1
Context group ID
GCF_003094635::NZ_QDIF01000003.1::G00009Context members
DD678_RS06220DD678_RS06225
Partner locus tags
DD678_RS06220DD678_RS06225
Partner old locus tags
DD678_06205DD678_06210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003829177.1Primary protein accession used for annex mappings.
UniProt accessionD4BP44Primary UniProt accession resolved in the annex database.
UniProt IDD4BP44_BIFBRDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDD678_RS06225Primary locus identifier stored in the genes table.
Old locus tagDD678_06210Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QDIF01000003.1Sequence record reported by the local genomic context database.
Genomic interval346 526-347 878 nt1 353 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span345 873-347 878 ntGCF_003094635::NZ_QDIF01000003.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003094635::NZ_QDIF01000003.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QDIF01000003.1All displayed genes belong to this local TCS context.
Neighborhood span345 873-347 878 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
345 873 nt347 878 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DD678_RS06220GCF_003094635#DD678_RS06220
RRNarL
345 873-346 526 nt · Reverse (-)
DD678_RS06225GCF_003094635#DD678_RS06225
HKClassicCurrent focus
346 526-347 878 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007525#BL_RS03045Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1962050
Simplified PFAM architecture for HKOC_1962050
PFAM domain coverage: 66 / 450 aa (14.7%)
1 aa450 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[215-280]
- Domain count: 1
- Matched identifier: HKOC_1962050
- Positioned domains: HisKA_3 215-280
Cluster members and taxonomy
Representative gene: GCF_000007525#BL_RS03045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003094635
AssemblyASM309463v1 · Contighaploid
Genome composition2 397 171 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key