1 Response_reg#1
2-106 aa · 105 aa · 50.2% of protein
Raw token
Response_reg:2:1.19e-27:106:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C8077_RS06560
Response regulator NarL family
Bifidobacterium adolescentis · GCF_003030905
ClassRRTypeNarLLength209 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003030905#C8077_RS06560Stable P2CS identifier used across views.
GenomeGCF_003030905Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length209 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 209 aa (77.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa209 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
144-200 aa · 57 aa · 27.3% of protein
Raw token
HTH_LUXR:144:4.01e-17:200:58:58- Raw architecture: Response_reg:2:1.19e-27:106:105:111#HTH_LUXR:144:4.01e-17:200:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003030905::NZ_CP028341.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1467986-1468615Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC8077_06550RefSeq proteinWP_233430100.1
Context group ID
GCF_003030905::NZ_CP028341.1::G00011Context members
C8077_RS06560
Partner locus tags
C8077_RS06560
Partner old locus tags
C8077_06550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_233430100.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC8077_RS06560Primary locus identifier stored in the genes table.
Old locus tagC8077_06550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP028341.1Sequence record reported by the local genomic context database.
Genomic interval1 467 986-1 468 615 nt630 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 467 986-1 468 615 ntGCF_003030905::NZ_CP028341.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003030905::NZ_CP028341.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP028341.1All displayed genes belong to this local TCS context.
Neighborhood span1 467 986-1 468 615 nt630 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 467 986 nt1 468 615 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C8077_RS06560GCF_003030905#C8077_RS06560
RRNarLCurrent focus
1 467 986-1 468 615 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003030905#C8077_RS06560The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma70_r4_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_2044800
Simplified PFAM architecture for RROC_2044800
PFAM domain coverage: 151 / 209 aa (72.2%)
1 aa209 aa
Response_regSigma70_r4_2
- Simplified architecture: Response_reg + Sigma70_r4_2
- Raw architecture: Response_reg[2-106] | Sigma70_r4_2[138-183]
- Domain count: 2
- Matched identifier: RROC_2044800
- Positioned domains: Response_reg 2-106 ; Response_reg 2-106 ; Sigma70_r4_2 138-183 ; Sigma70_r4_2 138-183
Cluster members and taxonomy
Representative gene: GCF_003030905#C8077_RS06560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_003030905
AssemblyASM303090v1 · Complete Genomehaploid
Genome composition2 192 428 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 24 · HK 11 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key