1 Hpt#1
4-96 aa · 93 aa · 14.0% of protein
Raw token
Hpt:4:5.91e-17:96:93:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CQ058_RS05515
Histidine kinase, CheA
Bacillus sp. MYb56 · GCF_002976445
ClassHKTypeCheALength662 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002976445#CQ058_RS05515Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length662 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage426 / 662 aa (64.4%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa662 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
279-338 aa · 60 aa · 9.1% of protein
Raw token
H-kinase_dim:279:0.00000000629:338:67:673 HATPase_c#3
386-525 aa · 140 aa · 21.1% of protein
Raw token
HATPase_c:386:9.33e-18:525:140:1094 CheW#4
530-662 aa · 133 aa · 20.1% of protein
Raw token
CheW:530:1.11e-21:662:139:138- Raw architecture: Hpt:4:5.91e-17:96:93:84#H-kinase_dim:279:0.00000000629:338:67:67#HATPase_c:386:9.33e-18:525:140:109#CheW:530:1.11e-21:662:139:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002976445::NZ_PCOH01000003.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span142385-144870Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCQ058_05505RefSeq proteinWP_105589519.1
Context group ID
GCF_002976445::NZ_PCOH01000003.1::G00018Context members
CQ058_RS05515CQ058_RS05520
Partner locus tags
CQ058_RS05515CQ058_RS05520
Partner old locus tags
CQ058_05505CQ058_05510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_105589519.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCQ058_RS05515Primary locus identifier stored in the genes table.
Old locus tagCQ058_05505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PCOH01000003.1Sequence record reported by the local genomic context database.
Genomic interval142 385-144 373 nt1 989 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span142 385-144 870 ntGCF_002976445::NZ_PCOH01000003.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002976445::NZ_PCOH01000003.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PCOH01000003.1All displayed genes belong to this local TCS context.
Neighborhood span142 385-144 870 nt2 486 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
142 385 nt144 870 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CQ058_RS05515GCF_002976445#CQ058_RS05515
HKCheACurrent focus
142 385-144 373 nt · Reverse (-)
CQ058_RS05520GCF_002976445#CQ058_RS05520
RRCheY
144 502-144 870 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002976445#CQ058_RS05515The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0867624
Simplified PFAM architecture for HKOC_0867624
PFAM domain coverage: 509 / 662 aa (76.9%)
1 aa662 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[4-103] | P2[148-225] | H-kinase_dim[279-337] | HATPase_c[386-525] | CheW[531-662]
- Domain count: 5
- Matched identifier: HKOC_0867624
- Positioned domains: Hpt 4-103 ; P2 148-225 ; H-kinase_dim 279-337 ; HATPase_c 386-525 ; CheW 531-662
Cluster members and taxonomy
Representative gene: GCF_002976445#CQ058_RS05515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 827 287 · GCF_002976445
AssemblyASM297644v1 · Scaffoldhaploid
Genome composition5 929 383 bp · 35,0% GCBacillus sp. MYb56
Signal transduction countsGenes 131 · HK 71 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key