1 HisKA_3#1
177-244 aa · 68 aa · 18.6% of protein
Raw token
HisKA_3:177:9.6e-20:244:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CQ058_RS04965
Histidine kinase, Classic
Bacillus sp. MYb56 · GCF_002976445
ClassHKTypeClassicLength366 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002976445#CQ058_RS04965Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 366 aa (39.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
289-365 aa · 77 aa · 21.0% of protein
Raw token
HATPase_c:289:0.000000000244:365:97:109- Raw architecture: HisKA_3:177:9.6e-20:244:68:68#HATPase_c:289:0.000000000244:365:97:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002976445::NZ_PCOH01000003.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span48079-49822Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCQ058_04955RefSeq proteinWP_002189129.1
Context group ID
GCF_002976445::NZ_PCOH01000003.1::G00017Context members
CQ058_RS04965CQ058_RS04970
Partner locus tags
CQ058_RS04965CQ058_RS04970
Partner old locus tags
CQ058_04955CQ058_04960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002189129.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCQ058_RS04965Primary locus identifier stored in the genes table.
Old locus tagCQ058_04955Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PCOH01000003.1Sequence record reported by the local genomic context database.
Genomic interval48 079-49 179 nt1 101 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span48 079-49 822 ntGCF_002976445::NZ_PCOH01000003.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002976445::NZ_PCOH01000003.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PCOH01000003.1All displayed genes belong to this local TCS context.
Neighborhood span48 079-49 822 nt1 744 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
48 079 nt49 822 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CQ058_RS04965GCF_002976445#CQ058_RS04965
HKClassicCurrent focus
48 079-49 179 nt · Reverse (-)
CQ058_RS04970GCF_002976445#CQ058_RS04970
RRNarL
49 184-49 822 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002976445#CQ058_RS04965The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2713471
Simplified PFAM architecture for HKOC_2713471
PFAM domain coverage: 67 / 366 aa (18.3%)
1 aa366 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[177-243]
- Domain count: 1
- Matched identifier: HKOC_2713471
- Positioned domains: HisKA_3 177-243
Cluster members and taxonomy
Representative gene: GCF_002976445#CQ058_RS04965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 827 287 · GCF_002976445
AssemblyASM297644v1 · Scaffoldhaploid
Genome composition5 929 383 bp · 35,0% GCBacillus sp. MYb56
Signal transduction countsGenes 131 · HK 71 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key