1 Response_reg#1
4-64 aa · 61 aa · 14.7% of protein
Raw token
Response_reg:4:0.0000000000425:64:61:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CQ058_RS04565
Response regulator, unclassified
Bacillus sp. MYb56 · GCF_002976445
ClassRRTypeunclassifiedLength414 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002976445#CQ058_RS04565Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length414 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage61 / 414 aa (14.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa414 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.0000000000425:64:61:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002976445::NZ_PCOH01000002.1::G00014
Group size22 locus tags listed below.
HK / RR0 / 2Counts resolved for the local TCS neighborhood.
Context span389448-391143Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCQ058_04555RefSeq proteinWP_105589491.1
Context group ID
GCF_002976445::NZ_PCOH01000002.1::G00014Context members
CQ058_RS04565CQ058_RS04570
Partner locus tags
CQ058_RS04565CQ058_RS04570
Partner old locus tags
CQ058_04555CQ058_04560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_105589491.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCQ058_RS04565Primary locus identifier stored in the genes table.
Old locus tagCQ058_04555Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PCOH01000002.1Sequence record reported by the local genomic context database.
Genomic interval389 448-390 692 nt1 245 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span389 448-391 143 ntGCF_002976445::NZ_PCOH01000002.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002976445::NZ_PCOH01000002.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PCOH01000002.1All displayed genes belong to this local TCS context.
Neighborhood span389 448-391 143 nt1 696 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
389 448 nt391 143 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CQ058_RS04565GCF_002976445#CQ058_RS04565
RRunclassifiedCurrent focus
389 448-390 692 nt · Reverse (-)
CQ058_RS04570GCF_002976445#CQ058_RS04570
RRCheY
390 697-391 143 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002976445#CQ058_RS04565The current gene is the representative for this cluster.
PFAM architectureResponse_reg + PNP_UDP_12 domains in the representative PFAM annotation.
PFAM architecture for RROC_0364120
Simplified PFAM architecture for RROC_0364120
PFAM domain coverage: 299 / 414 aa (72.2%)
1 aa414 aa
Response_regPNP_UDP_1
- Simplified architecture: Response_reg + PNP_UDP_1
- Raw architecture: Response_reg[4-67] | PNP_UDP_1[154-388]
- Domain count: 2
- Matched identifier: RROC_0364120
- Positioned domains: Response_reg 4-67 ; Response_reg 4-67 ; PNP_UDP_1 154-388 ; PNP_UDP_1 154-388
Cluster members and taxonomy
Representative gene: GCF_002976445#CQ058_RS04565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 827 287 · GCF_002976445
AssemblyASM297644v1 · Scaffoldhaploid
Genome composition5 929 383 bp · 35,0% GCBacillus sp. MYb56
Signal transduction countsGenes 131 · HK 71 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key