1 HAMP#1
165-232 aa · 68 aa · 14.8% of protein
Raw token
HAMP:165:0.00000000000000281:232:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CQ058_RS03235
Histidine kinase, Classic
Bacillus sp. MYb56 · GCF_002976445
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002976445#CQ058_RS03235Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 458 aa (49.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
244-303 aa · 60 aa · 13.1% of protein
Raw token
HisKA:244:0.00000000000173:303:61:643 HATPase_c#3
349-448 aa · 100 aa · 21.8% of protein
Raw token
HATPase_c:349:2.22e-17:448:103:109- Raw architecture: HAMP:165:0.00000000000000281:232:68:69#HisKA:244:0.00000000000173:303:61:64#HATPase_c:349:2.22e-17:448:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002976445::NZ_PCOH01000002.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span151363-153379Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCQ058_03225RefSeq proteinWP_002189889.1
Context group ID
GCF_002976445::NZ_PCOH01000002.1::G00012Context members
CQ058_RS03235CQ058_RS03240
Partner locus tags
CQ058_RS03235CQ058_RS03240
Partner old locus tags
CQ058_03225CQ058_03230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002189889.1Primary protein accession used for annex mappings.
UniProt accessionA0A654BDA9Primary UniProt accession resolved in the annex database.
UniProt IDA0A654BDA9_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCQ058_RS03235Primary locus identifier stored in the genes table.
Old locus tagCQ058_03225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PCOH01000002.1Sequence record reported by the local genomic context database.
Genomic interval151 363-152 739 nt1 377 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span151 363-153 379 ntGCF_002976445::NZ_PCOH01000002.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002976445::NZ_PCOH01000002.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PCOH01000002.1All displayed genes belong to this local TCS context.
Neighborhood span151 363-153 379 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
151 363 nt153 379 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CQ058_RS03235GCF_002976445#CQ058_RS03235
HKClassicCurrent focus
151 363-152 739 nt · Reverse (-)
CQ058_RS03240GCF_002976445#CQ058_RS03240
RROmpR
152 732-153 379 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399145#IIC_RS07690Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1859006
Simplified PFAM architecture for HKOC_1859006
PFAM domain coverage: 206 / 458 aa (45.0%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[182-232] | HisKA[245-303] | HATPase_c[350-445]
- Domain count: 3
- Matched identifier: HKOC_1859006
- Positioned domains: HAMP 182-232 ; HisKA 245-303 ; HATPase_c 350-445
Cluster members and taxonomy
Representative gene: GCF_000399145#IIC_RS07690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 827 287 · GCF_002976445
AssemblyASM297644v1 · Scaffoldhaploid
Genome composition5 929 383 bp · 35,0% GCBacillus sp. MYb56
Signal transduction countsGenes 131 · HK 71 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key