1 HisKA#1
124-170 aa · 47 aa · 14.4% of protein
Raw token
HisKA:124:0.00000958:170:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CQ058_RS02615
Histidine kinase, Classic
Bacillus sp. MYb56 · GCF_002976445
ClassHKTypeClassicLength327 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002976445#CQ058_RS02615Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length327 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 327 aa (47.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa327 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
217-324 aa · 108 aa · 33.0% of protein
Raw token
HATPase_c:217:8.06e-28:324:108:109- Raw architecture: HisKA:124:0.00000958:170:53:64#HATPase_c:217:8.06e-28:324:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002976445::NZ_PCOH01000002.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51088-52775Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCQ058_02600RefSeq proteinWP_002189808.1
Context group ID
GCF_002976445::NZ_PCOH01000002.1::G00011Context members
CQ058_RS02615CQ058_RS02620
Partner locus tags
CQ058_RS02615CQ058_RS02620
Partner old locus tags
CQ058_02600CQ058_02605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002189808.1Primary protein accession used for annex mappings.
UniProt accessionR8HUH8Primary UniProt accession resolved in the annex database.
UniProt IDR8HUH8_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCQ058_RS02615Primary locus identifier stored in the genes table.
Old locus tagCQ058_02600Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PCOH01000002.1Sequence record reported by the local genomic context database.
Genomic interval51 088-52 071 nt984 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 088-52 775 ntGCF_002976445::NZ_PCOH01000002.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002976445::NZ_PCOH01000002.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PCOH01000002.1All displayed genes belong to this local TCS context.
Neighborhood span51 088-52 775 nt1 688 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 088 nt52 775 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CQ058_RS02615GCF_002976445#CQ058_RS02615
HKClassicCurrent focus
51 088-52 071 nt · Reverse (-)
CQ058_RS02620GCF_002976445#CQ058_RS02620
RROmpR
52 068-52 775 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000018825#BCERKBAB4_RS12910Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2861273
Simplified PFAM architecture for HKOC_2861273
PFAM domain coverage: 107 / 327 aa (32.7%)
1 aa327 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[217-323]
- Domain count: 1
- Matched identifier: HKOC_2861273
- Positioned domains: HATPase_c 217-323
Cluster members and taxonomy
Representative gene: GCF_000018825#BCERKBAB4_RS12910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 827 287 · GCF_002976445
AssemblyASM297644v1 · Scaffoldhaploid
Genome composition5 929 383 bp · 35,0% GCBacillus sp. MYb56
Signal transduction countsGenes 131 · HK 71 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key