1 HisKA#1
163-222 aa · 60 aa · 16.1% of protein
Raw token
HisKA:163:0.000000000000459:222:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CQ058_RS01975
Histidine kinase, Classic
Bacillus sp. MYb56 · GCF_002976445
ClassHKTypeClassicLength372 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002976445#CQ058_RS01975Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length372 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 372 aa (44.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa372 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
266-370 aa · 105 aa · 28.2% of protein
Raw token
HATPase_c:266:5.94e-21:370:109:109- Raw architecture: HisKA:163:0.000000000000459:222:61:64#HATPase_c:266:5.94e-21:370:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002976445::NZ_PCOH01000001.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span399223-400341Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCQ058_01965RefSeq proteinWP_002085809.1
Context group ID
GCF_002976445::NZ_PCOH01000001.1::G00006Context members
CQ058_RS01975
Partner locus tags
CQ058_RS01975
Partner old locus tags
CQ058_01965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002085809.1Primary protein accession used for annex mappings.
UniProt accessionJ9C765Primary UniProt accession resolved in the annex database.
UniProt IDJ9C765_BACCEDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCQ058_RS01975Primary locus identifier stored in the genes table.
Old locus tagCQ058_01965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PCOH01000001.1Sequence record reported by the local genomic context database.
Genomic interval399 223-400 341 nt1 119 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span399 223-400 341 ntGCF_002976445::NZ_PCOH01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002976445::NZ_PCOH01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PCOH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span399 223-400 341 nt1 119 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
399 223 nt400 341 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CQ058_RS01975GCF_002976445#CQ058_RS01975
HKClassicCurrent focus
399 223-400 341 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290975#IC3_RS06925Use this link to inspect the representative gene detail.
PFAM architectureHisK_N + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2670414
Simplified PFAM architecture for HKOC_2670414
PFAM domain coverage: 292 / 372 aa (78.5%)
1 aa372 aa
HisK_NHisKAHATPase_c
- Simplified architecture: HisK_N + HisKA + HATPase_c
- Raw architecture: HisK_N[11-139] | HisKA[163-222] | HATPase_c[269-371]
- Domain count: 3
- Matched identifier: HKOC_2670414
- Positioned domains: HisK_N 11-139 ; HisKA 163-222 ; HATPase_c 269-371
Cluster members and taxonomy
Representative gene: GCF_000290975#IC3_RS06925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 827 287 · GCF_002976445
AssemblyASM297644v1 · Scaffoldhaploid
Genome composition5 929 383 bp · 35,0% GCBacillus sp. MYb56
Signal transduction countsGenes 131 · HK 71 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key