1 Response_reg#1
25-131 aa · 107 aa · 42.0% of protein
Raw token
Response_reg:25:5.53e-19:131:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AMR92_RS07840
Response regulator LytTR family
Clostridioides difficile · GCF_002954285
ClassRRTypeLytTRLength255 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002954285#AMR92_RS07840Stable P2CS identifier used across views.
GenomeGCF_002954285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length255 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 255 aa (76.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa255 aa
Domain-by-domain annotation2 items
2 LytTR#2
160-246 aa · 87 aa · 34.1% of protein
Raw token
LytTR:160:2.93e-18:246:93:98- Raw architecture: Response_reg:25:5.53e-19:131:110:111#LytTR:160:2.93e-18:246:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002954285::NZ_LJCN01000007.1::G00053
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span79659-80426Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002954285::NZ_LJCN01000007.1::G00053Context members
AMR92_RS07840
Partner locus tags
AMR92_RS07840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009900049.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAMR92_RS07840Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LJCN01000007.1Sequence record reported by the local genomic context database.
Genomic interval79 659-80 426 nt768 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span79 659-80 426 ntGCF_002954285::NZ_LJCN01000007.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002954285::NZ_LJCN01000007.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJCN01000007.1All displayed genes belong to this local TCS context.
Neighborhood span79 659-80 426 nt768 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 659 nt80 426 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AMR92_RS07840GCF_002954285#AMR92_RS07840
RRLytTRCurrent focus
79 659-80 426 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002954285#AMR92_RS07840The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0681516
Simplified PFAM architecture for RROC_0681516
PFAM domain coverage: 197 / 255 aa (77.3%)
1 aa255 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[25-135] | LytTR[160-245]
- Domain count: 2
- Matched identifier: RROC_0681516
- Positioned domains: Response_reg 25-135 ; Response_reg 25-135 ; LytTR 160-245 ; LytTR 160-245
Cluster members and taxonomy
Representative gene: GCF_002954285#AMR92_RS07840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002954285
AssemblyASM295428v1 · Scaffoldhaploid
Genome composition4 126 645 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key