1 Response_reg#1
4-110 aa · 107 aa · 45.9% of protein
Raw token
Response_reg:4:3.07e-18:110:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4E26_RS16280
Response regulator LytTR family
Clostridioides difficile · GCF_002946555
ClassRRTypeLytTRLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002946555#C4E26_RS16280Stable P2CS identifier used across views.
GenomeGCF_002946555Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 233 aa (84.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
137-225 aa · 89 aa · 38.2% of protein
Raw token
LytTR:137:2.9e-21:225:95:98- Raw architecture: Response_reg:4:3.07e-18:110:110:111#LytTR:137:2.9e-21:225:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002946555::NZ_CP026614.2::G00045
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3469425-3470126Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC4E26_08550RefSeq proteinWP_003422432.1
Context group ID
GCF_002946555::NZ_CP026614.2::G00045Context members
C4E26_RS16280
Partner locus tags
C4E26_RS16280
Partner old locus tags
C4E26_08550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003422432.1Primary protein accession used for annex mappings.
UniProt accessionD5Q849Primary UniProt accession resolved in the annex database.
UniProt IDD5Q849_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4E26_RS16280Primary locus identifier stored in the genes table.
Old locus tagC4E26_08550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP026614.2Sequence record reported by the local genomic context database.
Genomic interval3 469 425-3 470 126 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 469 425-3 470 126 ntGCF_002946555::NZ_CP026614.2::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002946555::NZ_CP026614.2::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP026614.2All displayed genes belong to this local TCS context.
Neighborhood span3 469 425-3 470 126 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 469 425 nt3 470 126 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C4E26_RS16280GCF_002946555#C4E26_RS16280
RRLytTRCurrent focus
3 469 425-3 470 126 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0215145Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080784
Simplified PFAM architecture for RROC_1080784
PFAM domain coverage: 196 / 233 aa (84.1%)
1 aa233 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-111] | LytTR[136-224]
- Domain count: 2
- Matched identifier: RROC_1080784
- Positioned domains: Response_reg 5-111 ; Response_reg 5-111 ; LytTR 136-224 ; LytTR 136-224
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0215145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002946555
AssemblyASM294655v2 · Complete Genomehaploid
Genome composition4 093 145 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key