1 HisKA#1
447-513 aa · 67 aa · 10.0% of protein
Raw token
HisKA:447:3.52e-18:513:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C3351_RS13365
Histidine kinase, Classic
Clostridioides difficile · GCF_002946035
ClassHKTypeClassicLength667 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002946035#C3351_RS13365Stable P2CS identifier used across views.
GenomeGCF_002946035Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length667 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 667 aa (25.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
560-664 aa · 105 aa · 15.7% of protein
Raw token
HATPase_c:560:0.000000000811:664:110:109- Raw architecture: HisKA:447:3.52e-18:513:67:64#HATPase_c:560:0.000000000811:664:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002946035::NZ_CP026597.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2809061-2812086Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC3351_13365RefSeq proteinWP_235656068.1
Context group ID
GCF_002946035::NZ_CP026597.1::G00041Context members
C3351_RS13365C3351_RS13370
Partner locus tags
C3351_RS13365C3351_RS13370
Partner old locus tags
C3351_13365C3351_13370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235656068.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC3351_RS13365Primary locus identifier stored in the genes table.
Old locus tagC3351_13365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP026597.1Sequence record reported by the local genomic context database.
Genomic interval2 809 061-2 811 064 nt2 004 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 809 061-2 812 086 ntGCF_002946035::NZ_CP026597.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002946035::NZ_CP026597.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP026597.1All displayed genes belong to this local TCS context.
Neighborhood span2 809 061-2 812 086 nt3 026 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 809 061 nt2 812 086 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C3351_RS13365GCF_002946035#C3351_RS13365
HKClassicCurrent focus
2 809 061-2 811 064 nt · Reverse (-)
C3351_RS13370GCF_002946035#C3351_RS13370
RROmpR
2 811 370-2 812 086 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002946035#C3351_RS13365The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0854018
Simplified PFAM architecture for HKOC_0854018
PFAM domain coverage: 172 / 667 aa (25.8%)
1 aa667 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[447-513] | HATPase_c[560-664]
- Domain count: 2
- Matched identifier: HKOC_0854018
- Positioned domains: HisKA 447-513 ; HATPase_c 560-664
Cluster members and taxonomy
Representative gene: GCF_002946035#C3351_RS13365
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 1 over 1 total members. Page 1 / 1.
GCF_002946035#C3351_RS13365 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002946035
AssemblyASM294603v1 · Complete Genomehaploid
Genome composition4 119 749 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 47 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key