1 Response_reg#1
5-114 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:5:5.04e-22:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C3L34_RS17445
Response regulator OmpR family
Clostridioides difficile · GCF_002945515
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_002945515#C3L34_RS17445Stable P2CS identifier used across views.
GenomeGCF_002945515Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 226 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:150:2.96e-22:223:75:77- Raw architecture: Response_reg:5:5.04e-22:114:111:111#Trans_reg_C:150:2.96e-22:223:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_002945515::NZ_CP026591.1::G00056
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span3740234-3745959Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC3L34_17445RefSeq proteinWP_009891737.1
Context group ID
GCF_002945515::NZ_CP026591.1::G00056Context members
C3L34_RS17435C3L34_RS17440C3L34_RS17445C3L34_RS17450C3L34_RS17455
Partner locus tags
C3L34_RS17435C3L34_RS17440C3L34_RS17445C3L34_RS17450C3L34_RS17455
Partner old locus tags
C3L34_17435C3L34_17440C3L34_17445C3L34_17450C3L34_17455
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009891737.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N6A7Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N6A7_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC3L34_RS17445Primary locus identifier stored in the genes table.
Old locus tagC3L34_17445Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP026591.1Sequence record reported by the local genomic context database.
Genomic interval3 742 465-3 743 145 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 740 234-3 745 959 ntGCF_002945515::NZ_CP026591.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002945515::NZ_CP026591.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP026591.1All displayed genes belong to this local TCS context.
Neighborhood span3 740 234-3 745 959 nt5 726 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 740 234 nt3 745 959 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
C3L34_RS17435GCF_002945515#C3L34_RS17435
HKClassic
3 740 234-3 741 349 nt · Reverse (-)
C3L34_RS17440GCF_002945515#C3L34_RS17440
RROmpR
3 741 385-3 742 083 nt · Reverse (-)
C3L34_RS17445GCF_002945515#C3L34_RS17445
RROmpRCurrent focus
3 742 465-3 743 145 nt · Reverse (-)
C3L34_RS17450GCF_002945515#C3L34_RS17450
HKClassic
3 743 195-3 745 210 nt · Reverse (-)
C3L34_RS17455GCF_002945515#C3L34_RS17455
RROmpR
3 745 282-3 745 959 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0216525Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1407941
Simplified PFAM architecture for RROC_1407941
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1407941
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0216525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002945515
AssemblyASM294551v1 · Complete Genomehaploid
Genome composition4 201 330 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 51 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key