1 Response_reg#1
4-120 aa · 117 aa · 49.6% of protein
Raw token
Response_reg:4:7.92e-22:120:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C3L34_RS03440
Response regulator LytTR family
Clostridioides difficile · GCF_002945515
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002945515#C3L34_RS03440Stable P2CS identifier used across views.
GenomeGCF_002945515Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 236 aa (85.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
141-225 aa · 85 aa · 36.0% of protein
Raw token
LytTR:141:8.31e-19:225:92:98- Raw architecture: Response_reg:4:7.92e-22:120:119:111#LytTR:141:8.31e-19:225:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002945515::NZ_CP026591.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span665078-665788Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC3L34_03440RefSeq proteinWP_009888406.1
Context group ID
GCF_002945515::NZ_CP026591.1::G00012Context members
C3L34_RS03440
Partner locus tags
C3L34_RS03440
Partner old locus tags
C3L34_03440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009888406.1Primary protein accession used for annex mappings.
UniProt accessionA0AB74R3G4Primary UniProt accession resolved in the annex database.
UniProt IDA0AB74R3G4_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC3L34_RS03440Primary locus identifier stored in the genes table.
Old locus tagC3L34_03440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP026591.1Sequence record reported by the local genomic context database.
Genomic interval665 078-665 788 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span665 078-665 788 ntGCF_002945515::NZ_CP026591.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002945515::NZ_CP026591.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP026591.1All displayed genes belong to this local TCS context.
Neighborhood span665 078-665 788 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
665 078 nt665 788 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C3L34_RS03440GCF_002945515#C3L34_RS03440
RRLytTRCurrent focus
665 078-665 788 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0203145Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988172
Simplified PFAM architecture for RROC_0988172
PFAM domain coverage: 200 / 236 aa (84.7%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-119] | LytTR[142-225]
- Domain count: 2
- Matched identifier: RROC_0988172
- Positioned domains: Response_reg 4-119 ; Response_reg 4-119 ; LytTR 142-225 ; LytTR 142-225
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0203145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002945515
AssemblyASM294551v1 · Complete Genomehaploid
Genome composition4 201 330 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 51 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key