1 Response_reg#1
1-95 aa · 95 aa · 41.9% of protein
Raw token
Response_reg:1:2.03e-23:95:96:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWN78_RS07255
Response regulator OmpR family
Clostridioides difficile · GCF_002940905
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002940905#AWN78_RS07255Stable P2CS identifier used across views.
GenomeGCF_002940905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 227 aa (75.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-222 aa · 77 aa · 33.9% of protein
Raw token
Trans_reg_C:146:6.71e-33:222:77:77- Raw architecture: Response_reg:1:2.03e-23:95:96:111#Trans_reg_C:146:6.71e-33:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002940905::NZ_LRDI01000140.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14240-16330Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAWN78_09590RefSeq proteinWP_330403655.1
Context group ID
GCF_002940905::NZ_LRDI01000140.1::G00027Context members
AWN78_RS07255AWN78_RS07260
Partner locus tags
AWN78_RS07255AWN78_RS07260
Partner old locus tags
AWN78_09590AWN78_09595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330403655.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWN78_RS07255Primary locus identifier stored in the genes table.
Old locus tagAWN78_09590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LRDI01000140.1Sequence record reported by the local genomic context database.
Genomic interval14 240-14 923 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 240-16 330 ntGCF_002940905::NZ_LRDI01000140.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002940905::NZ_LRDI01000140.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LRDI01000140.1All displayed genes belong to this local TCS context.
Neighborhood span14 240-16 330 nt2 091 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 240 nt16 330 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AWN78_RS07255GCF_002940905#AWN78_RS07255
RROmpRCurrent focus
14 240-14 923 nt · Forward (+)
AWN78_RS07260GCF_002940905#AWN78_RS07260
HKClassic
14 927-16 330 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002940905#AWN78_RS07255The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1365154
Simplified PFAM architecture for RROC_1365154
PFAM domain coverage: 173 / 227 aa (76.2%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-97] | Trans_reg_C[146-222]
- Domain count: 2
- Matched identifier: RROC_1365154
- Positioned domains: Response_reg 2-97 ; Response_reg 2-97 ; Trans_reg_C 146-222 ; Trans_reg_C 146-222
Cluster members and taxonomy
Representative gene: GCF_002940905#AWN78_RS07255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002940905
AssemblyASM294090v1 · Contighaploid
Genome composition4 212 322 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 50 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key