1 Response_reg#1
1-108 aa · 108 aa · 48.9% of protein
Raw token
Response_reg:1:1.87e-22:108:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWN79_RS15380
Response regulator OmpR family
Clostridioides difficile · GCF_002940845
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002940845#AWN79_RS15380Stable P2CS identifier used across views.
GenomeGCF_002940845Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 221 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-217 aa · 74 aa · 33.5% of protein
Raw token
Trans_reg_C:144:4.34e-26:217:75:77- Raw architecture: Response_reg:1:1.87e-22:108:109:111#Trans_reg_C:144:4.34e-26:217:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002940845::NZ_LRDL01000198.1::G00045
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span25464-26130Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAWN79_16210RefSeq proteinWP_104686392.1
Context group ID
GCF_002940845::NZ_LRDL01000198.1::G00045Context members
AWN79_RS15380
Partner locus tags
AWN79_RS15380
Partner old locus tags
AWN79_16210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_104686392.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWN79_RS15380Primary locus identifier stored in the genes table.
Old locus tagAWN79_16210Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LRDL01000198.1Sequence record reported by the local genomic context database.
Genomic interval25 464-26 130 nt667 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 464-26 130 ntGCF_002940845::NZ_LRDL01000198.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002940845::NZ_LRDL01000198.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LRDL01000198.1All displayed genes belong to this local TCS context.
Neighborhood span25 464-26 130 nt667 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 464 nt26 130 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AWN79_RS15380GCF_002940845#AWN79_RS15380
RROmpRCurrent focus
25 464-26 130 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449145#QCS_RS14795Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1410988
Simplified PFAM architecture for RROC_1410988
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1410988
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_000449145#QCS_RS14795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002940845
AssemblyASM294084v1 · Contighaploid
Genome composition4 283 325 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key