1 HisKA#1
66-134 aa · 69 aa · 23.3% of protein
Raw token
HisKA:66:0.000000000000569:134:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWN77_RS22165
Histidine kinase, Classic
Clostridioides difficile · GCF_002940825
ClassHKTypeClassicLength296 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002940825#AWN77_RS22165Stable P2CS identifier used across views.
GenomeGCF_002940825Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length296 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 296 aa (60.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa296 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
181-289 aa · 109 aa · 36.8% of protein
Raw token
HATPase_c:181:1.59e-25:289:109:109- Raw architecture: HisKA:66:0.000000000000569:134:69:64#HATPase_c:181:1.59e-25:289:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002940825::NZ_LRDM01000197.1::G00055
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span40679-41569Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002940825::NZ_LRDM01000197.1::G00055Context members
AWN77_RS22165
Partner locus tags
AWN77_RS22165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_254049021.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWN77_RS22165Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LRDM01000197.1Sequence record reported by the local genomic context database.
Genomic interval40 679-41 569 nt891 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span40 679-41 569 ntGCF_002940825::NZ_LRDM01000197.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002940825::NZ_LRDM01000197.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LRDM01000197.1All displayed genes belong to this local TCS context.
Neighborhood span40 679-41 569 nt891 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 679 nt41 569 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AWN77_RS22165GCF_002940825#AWN77_RS22165
HKClassicCurrent focus
40 679-41 569 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002940825#AWN77_RS22165The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2891469
Simplified PFAM architecture for HKOC_2891469
PFAM domain coverage: 170 / 296 aa (57.4%)
1 aa296 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[66-127] | HATPase_c[181-288]
- Domain count: 2
- Matched identifier: HKOC_2891469
- Positioned domains: HisKA 66-127 ; HATPase_c 181-288
Cluster members and taxonomy
Representative gene: GCF_002940825#AWN77_RS22165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002940825
AssemblyASM294082v1 · Contighaploid
Genome composition4 390 681 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key