1 Response_reg#1
5-80 aa · 76 aa · 78.4% of protein
Raw token
Response_reg:5:0.000000000000198:80:77:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWN77_RS22130
Response regulator, CheY family
Clostridioides difficile · GCF_002940825
ClassRRTypeCheYLength97 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002940825#AWN77_RS22130Stable P2CS identifier used across views.
GenomeGCF_002940825Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length97 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage76 / 97 aa (78.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa97 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:0.000000000000198:80:77:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002940825::NZ_LRDM01000193.1::G00050
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span348-641Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002940825::NZ_LRDM01000193.1::G00050Context members
AWN77_RS22130
Partner locus tags
AWN77_RS22130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_254049014.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWN77_RS22130Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LRDM01000193.1Sequence record reported by the local genomic context database.
Genomic interval348-641 nt294 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span348-641 ntGCF_002940825::NZ_LRDM01000193.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002940825::NZ_LRDM01000193.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LRDM01000193.1All displayed genes belong to this local TCS context.
Neighborhood span348-641 nt294 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
348 nt641 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AWN77_RS22130GCF_002940825#AWN77_RS22130
RRCheYCurrent focus
348-641 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002940825#AWN77_RS22130The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2472449
Simplified PFAM architecture for RROC_2472449
PFAM domain coverage: 88 / 97 aa (90.7%)
1 aa97 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-92]
- Domain count: 1
- Matched identifier: RROC_2472449
- Positioned domains: Response_reg 5-92 ; Response_reg 5-92
Cluster members and taxonomy
Representative gene: GCF_002940825#AWN77_RS22130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002940825
AssemblyASM294082v1 · Contighaploid
Genome composition4 390 681 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key