1 Response_reg#1
22-97 aa · 76 aa · 33.5% of protein
Raw token
Response_reg:22:1.1e-16:97:79:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWI45_RS00445
Response regulator LytTR family
Clostridioides difficile · GCF_002939365
ClassRRTypeLytTRLength227 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002939365#AWI45_RS00445Stable P2CS identifier used across views.
GenomeGCF_002939365Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 227 aa (74.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 LytTR#2
126-218 aa · 93 aa · 41.0% of protein
Raw token
LytTR:126:5.76e-18:218:97:98- Raw architecture: Response_reg:22:1.1e-16:97:79:111#LytTR:126:5.76e-18:218:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002939365::NZ_LQZJ01000011.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span72416-73099Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAWI45_10765RefSeq proteinWP_104686348.1
Context group ID
GCF_002939365::NZ_LQZJ01000011.1::G00001Context members
AWI45_RS00445
Partner locus tags
AWI45_RS00445
Partner old locus tags
AWI45_10765
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_104686348.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWI45_RS00445Primary locus identifier stored in the genes table.
Old locus tagAWI45_10765Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LQZJ01000011.1Sequence record reported by the local genomic context database.
Genomic interval72 416-73 099 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span72 416-73 099 ntGCF_002939365::NZ_LQZJ01000011.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002939365::NZ_LQZJ01000011.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LQZJ01000011.1All displayed genes belong to this local TCS context.
Neighborhood span72 416-73 099 nt684 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 416 nt73 099 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AWI45_RS00445GCF_002939365#AWI45_RS00445
RRLytTRCurrent focus
72 416-73 099 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002082985#A6J97_RS00035Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0966322
Simplified PFAM architecture for RROC_0966322
PFAM domain coverage: 178 / 237 aa (75.1%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[27-112] | LytTR[137-228]
- Domain count: 2
- Matched identifier: RROC_0966322
- Positioned domains: Response_reg 27-112 ; Response_reg 27-112 ; LytTR 137-228 ; LytTR 137-228
Cluster members and taxonomy
Representative gene: GCF_002082985#A6J97_RS00035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002939365
AssemblyASM293936v1 · Contighaploid
Genome composition4 160 193 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 91 · HK 43 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key