1 Response_reg#1
3-106 aa · 104 aa · 47.9% of protein
Raw token
Response_reg:3:1.35e-21:106:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDA69_RS06570
Response regulator NarL family
Bifidobacterium breve · GCF_002914865
ClassRRTypeNarLLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002914865#CDA69_RS06570Stable P2CS identifier used across views.
GenomeGCF_002914865Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 217 aa (72.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-211 aa · 54 aa · 24.9% of protein
Raw token
HTH_LUXR:158:2.35e-20:211:54:58- Raw architecture: Response_reg:3:1.35e-21:106:104:111#HTH_LUXR:158:2.35e-20:211:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002914865::NZ_NIGS01000007.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span97877-99882Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDA69_01282RefSeq proteinWP_003829171.1
Context group ID
GCF_002914865::NZ_NIGS01000007.1::G00008Context members
CDA69_RS06570CDA69_RS06575
Partner locus tags
CDA69_RS06570CDA69_RS06575
Partner old locus tags
CDA69_01282CDA69_01283
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003829171.1Primary protein accession used for annex mappings.
UniProt accessionD4BP43Primary UniProt accession resolved in the annex database.
UniProt IDD4BP43_BIFBRDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDA69_RS06570Primary locus identifier stored in the genes table.
Old locus tagCDA69_01282Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIGS01000007.1Sequence record reported by the local genomic context database.
Genomic interval97 877-98 530 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span97 877-99 882 ntGCF_002914865::NZ_NIGS01000007.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002914865::NZ_NIGS01000007.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIGS01000007.1All displayed genes belong to this local TCS context.
Neighborhood span97 877-99 882 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
97 877 nt99 882 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDA69_RS06570GCF_002914865#CDA69_RS06570
RRNarLCurrent focus
97 877-98 530 nt · Reverse (-)
CDA69_RS06575GCF_002914865#CDA69_RS06575
HKClassic
98 530-99 882 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000158015#BIFBRE_RS05170Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1847701
Simplified PFAM architecture for RROC_1847701
PFAM domain coverage: 158 / 217 aa (72.8%)
1 aa217 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-107] | GerE[158-210]
- Domain count: 2
- Matched identifier: RROC_1847701
- Positioned domains: Response_reg 3-107 ; Response_reg 3-107 ; GerE 158-210 ; GerE 158-210
Cluster members and taxonomy
Representative gene: GCF_000158015#BIFBRE_RS05170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_002914865
AssemblyASM291486v1 · Contighaploid
Genome composition2 317 196 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 21 · HK 9 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key