1 Response_reg#1
4-113 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:4:1.99e-25:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAWEI_RS10135
Response regulator OmpR family
Bacillus mycoides · GCF_002909205
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002909205#BAWEI_RS10135Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 234 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-225 aa · 71 aa · 30.3% of protein
Raw token
Trans_reg_C:155:1.99e-25:225:72:77- Raw architecture: Response_reg:4:1.99e-25:113:111:111#Trans_reg_C:155:1.99e-25:225:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002909205::NZ_MKZP01000005.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46076-47769Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAWEI_19680RefSeq proteinWP_016120219.1
Context group ID
GCF_002909205::NZ_MKZP01000005.1::G00027Context members
BAWEI_RS10130BAWEI_RS10135
Partner locus tags
BAWEI_RS10130BAWEI_RS10135
Partner old locus tags
BAWEI_19670BAWEI_19680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016120219.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8KSA8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8KSA8_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAWEI_RS10135Primary locus identifier stored in the genes table.
Old locus tagBAWEI_19680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MKZP01000005.1Sequence record reported by the local genomic context database.
Genomic interval47 065-47 769 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span46 076-47 769 ntGCF_002909205::NZ_MKZP01000005.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002909205::NZ_MKZP01000005.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MKZP01000005.1All displayed genes belong to this local TCS context.
Neighborhood span46 076-47 769 nt1 694 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 076 nt47 769 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAWEI_RS10130GCF_002909205#BAWEI_RS10130
HKClassic
46 076-47 062 nt · Reverse (-)
BAWEI_RS10135GCF_002909205#BAWEI_RS10135
RROmpRCurrent focus
47 065-47 769 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399045#IKK_RS10930Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1048741
Simplified PFAM architecture for RROC_1048741
PFAM domain coverage: 181 / 234 aa (77.4%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[154-225]
- Domain count: 2
- Matched identifier: RROC_1048741
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 154-225 ; Trans_reg_C 154-225
Cluster members and taxonomy
Representative gene: GCF_000399045#IKK_RS10930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002909205
AssemblyASM290920v1 · Contighaploid
Genome composition6 016 834 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 131 · HK 70 · RR 61CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key