1 HAMP#1
164-233 aa · 70 aa · 14.3% of protein
Raw token
HAMP:164:0.00000000000000167:233:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BACWE_RS23705
Histidine kinase, Classic
Bacillus mycoides · GCF_002909185
ClassHKTypeClassicLength490 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002909185#BACWE_RS23705Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length490 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 490 aa (48.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa490 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-323 aa · 66 aa · 13.5% of protein
Raw token
HisKA:258:0.0000000000000309:323:66:643 HATPase_c#3
369-469 aa · 101 aa · 20.6% of protein
Raw token
HATPase_c:369:2.09e-16:469:101:109- Raw architecture: HAMP:164:0.00000000000000167:233:70:69#HisKA:258:0.0000000000000309:323:66:64#HATPase_c:369:2.09e-16:469:101:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002909185::NZ_MKZQ01000058.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span229587-231717Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBACWE_45110RefSeq proteinWP_103458613.1
Context group ID
GCF_002909185::NZ_MKZQ01000058.1::G00054Context members
BACWE_RS23700BACWE_RS23705
Partner locus tags
BACWE_RS23700BACWE_RS23705
Partner old locus tags
BACWE_45100BACWE_45110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103458613.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8KSU5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8KSU5_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBACWE_RS23705Primary locus identifier stored in the genes table.
Old locus tagBACWE_45110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MKZQ01000058.1Sequence record reported by the local genomic context database.
Genomic interval230 245-231 717 nt1 473 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span229 587-231 717 ntGCF_002909185::NZ_MKZQ01000058.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002909185::NZ_MKZQ01000058.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MKZQ01000058.1All displayed genes belong to this local TCS context.
Neighborhood span229 587-231 717 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
229 587 nt231 717 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BACWE_RS23700GCF_002909185#BACWE_RS23700
RROmpR
229 587-230 252 nt · Forward (+)
BACWE_RS23705GCF_002909185#BACWE_RS23705
HKClassicCurrent focus
230 245-231 717 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002909185#BACWE_RS23705The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1535225
Simplified PFAM architecture for HKOC_1535225
PFAM domain coverage: 218 / 490 aa (44.5%)
1 aa490 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-233] | HisKA[259-323] | HATPase_c[370-469]
- Domain count: 3
- Matched identifier: HKOC_1535225
- Positioned domains: HAMP 181-233 ; HisKA 259-323 ; HATPase_c 370-469
Cluster members and taxonomy
Representative gene: GCF_002909185#BACWE_RS23705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002909185
AssemblyASM290918v1 · Contighaploid
Genome composition6 015 410 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 131 · HK 70 · RR 61CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key