1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:1.07e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BACWE_RS02825
Response regulator OmpR family
Bacillus mycoides · GCF_002909185
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002909185#BACWE_RS02825Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:151:4.37e-32:227:77:77- Raw architecture: Response_reg:4:1.07e-34:113:111:111#Trans_reg_C:151:4.37e-32:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002909185::NZ_MKZQ01000007.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span121748-123893Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBACWE_05280RefSeq proteinWP_078213658.1
Context group ID
GCF_002909185::NZ_MKZQ01000007.1::G00005Context members
BACWE_RS02820BACWE_RS02825
Partner locus tags
BACWE_RS02820BACWE_RS02825
Partner old locus tags
BACWE_05270BACWE_05280
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_078213658.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBACWE_RS02825Primary locus identifier stored in the genes table.
Old locus tagBACWE_05280Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MKZQ01000007.1Sequence record reported by the local genomic context database.
Genomic interval123 204-123 893 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span121 748-123 893 ntGCF_002909185::NZ_MKZQ01000007.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002909185::NZ_MKZQ01000007.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MKZQ01000007.1All displayed genes belong to this local TCS context.
Neighborhood span121 748-123 893 nt2 146 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
121 748 nt123 893 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BACWE_RS02820GCF_002909185#BACWE_RS02820
HKClassic
121 748-123 202 nt · Forward (+)
BACWE_RS02825GCF_002909185#BACWE_RS02825
RROmpRCurrent focus
123 204-123 893 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014715#BGP34_RS06000Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1256493
Simplified PFAM architecture for RROC_1256493
PFAM domain coverage: 186 / 229 aa (81.2%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1256493
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 152-227 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_002014715#BGP34_RS06000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_002909185
AssemblyASM290918v1 · Contighaploid
Genome composition6 015 410 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 131 · HK 70 · RR 61CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key