1 H_kinase_N#1
9-145 aa · 137 aa · 27.7% of protein
Raw token
H_kinase_N:9:3.33e-51:145:138:139P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN1726_RS01670
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_002900845
ClassHKTypeClassicLength495 aaTM0ValidatedNoCompleteYesContextNo local context
Gene IDGCF_002900845#BN1726_RS01670Stable P2CS identifier used across views.
GenomeGCF_002900845Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
External referencesMIST4 BN1726_RS01670MIST4
Domain signature
Compact overview inferred from the domain field
H_kinase_NPAS_4HisKA_2HATPase_c
Protein length495 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage414 / 495 aa (83.6%)Merged over positioned domains only.
Domain description1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa495 aa
Domain-by-domain annotation4 items
2 PAS_4#2
175-278 aa · 104 aa · 21.0% of protein
Raw token
PAS_4:175:0.00000000126:278:109:1103 HisKA_2#3
292-361 aa · 70 aa · 14.1% of protein
Raw token
HisKA_2:292:2.45e-30:361:71:764 HATPase_c#4
388-490 aa · 103 aa · 20.8% of protein
Raw token
HATPase_c:388:0.00000000000000167:490:112:109- Raw architecture: H_kinase_N:9:3.33e-51:145:138:139#PAS_4:175:0.00000000126:278:109:110#HisKA_2:292:2.45e-30:361:71:76#HATPase_c:388:0.00000000000000167:490:112:109
- Domain description: 1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
No local TCS context mapping is available for this gene.
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN1726_RS01670Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconUnavailableNo contig or replicon mapping is available for this gene.
Genomic intervalUnavailableNo start/end genomic coordinates are available for this gene.
StrandUnavailableStrand sign follows the local context database convention.
Local TCS group spanUnavailableNo grouped neighborhood span is available for this gene.
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
No local TCS neighborhood is available for this gene on this server.
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003135#HMPREF0175_RS08190Use this link to inspect the representative gene detail.
PFAM architectureGAF_PdtaS + PAS_4 + HisKA_2 + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1504244
Simplified PFAM architecture for HKOC_1504244
PFAM domain coverage: 417 / 495 aa (84.2%)
1 aa495 aa
GAF_PdtaSPAS_4HisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + PAS_4 + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[5-141] | PAS_4[173-278] | HisKA_2[292-363] | HATPase_c[388-489]
- Domain count: 4
- Matched identifier: HKOC_1504244
- Positioned domains: GAF_PdtaS 5-141 ; PAS_4 173-278 ; HisKA_2 292-363 ; HATPase_c 388-489
Cluster members and taxonomy
Representative gene: GCF_000003135#HMPREF0175_RS08190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_002900845
AssemblyASM290084v1 · Contighaploid
Genome composition2 467 698 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 22 · HK 10 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key