1 HisKA#1
140-199 aa · 60 aa · 16.4% of protein
Raw token
HisKA:140:0.000000000217:199:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AMR90_RS14125
Histidine kinase, Classic
Clostridioides difficile · GCF_002891625
ClassHKTypeClassicLength365 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002891625#AMR90_RS14125Stable P2CS identifier used across views.
GenomeGCF_002891625Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length365 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 365 aa (45.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
256-361 aa · 106 aa · 29.0% of protein
Raw token
HATPase_c:256:3.13e-27:361:106:109- Raw architecture: HisKA:140:0.000000000217:199:60:64#HATPase_c:256:3.13e-27:361:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002891625::NZ_LJCL01000024.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19288-21124Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002891625::NZ_LJCL01000024.1::G00029Context members
AMR90_RS14125AMR90_RS14130
Partner locus tags
AMR90_RS14125AMR90_RS14130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_237673085.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAMR90_RS14125Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LJCL01000024.1Sequence record reported by the local genomic context database.
Genomic interval19 288-20 385 nt1 098 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 288-21 124 ntGCF_002891625::NZ_LJCL01000024.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002891625::NZ_LJCL01000024.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJCL01000024.1All displayed genes belong to this local TCS context.
Neighborhood span19 288-21 124 nt1 837 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 288 nt21 124 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AMR90_RS14125GCF_002891625#AMR90_RS14125
HKClassicCurrent focus
19 288-20 385 nt · Reverse (-)
AMR90_RS14130GCF_002891625#AMR90_RS14130
RROmpR
20 390-21 124 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002891625#AMR90_RS14125The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2719748
Simplified PFAM architecture for HKOC_2719748
PFAM domain coverage: 167 / 365 aa (45.8%)
1 aa365 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[140-199] | HATPase_c[256-362]
- Domain count: 2
- Matched identifier: HKOC_2719748
- Positioned domains: HisKA 140-199 ; HATPase_c 256-362
Cluster members and taxonomy
Representative gene: GCF_002891625#AMR90_RS14125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002891625
AssemblyASM289162v1 · Scaffoldhaploid
Genome composition4 268 222 bp · 28,0% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key