1 Response_reg#1
71-130 aa · 60 aa · 23.7% of protein
Raw token
Response_reg:71:0.000000014:130:60:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AMR90_RS05835
Response regulator LytTR family
Clostridioides difficile · GCF_002891625
ClassRRTypeLytTRLength253 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002891625#AMR90_RS05835Stable P2CS identifier used across views.
GenomeGCF_002891625Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length253 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 253 aa (60.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa253 aa
Domain-by-domain annotation2 items
2 LytTR#2
154-246 aa · 93 aa · 36.8% of protein
Raw token
LytTR:154:2.27e-19:246:98:98- Raw architecture: Response_reg:71:0.000000014:130:60:111#LytTR:154:2.27e-19:246:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002891625::NZ_LJCL01000008.1::G00054
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2335-3096Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002891625::NZ_LJCL01000008.1::G00054Context members
AMR90_RS05835
Partner locus tags
AMR90_RS05835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_054269367.1Primary protein accession used for annex mappings.
UniProt accessionA0A386JBW7Primary UniProt accession resolved in the annex database.
UniProt IDA0A386JBW7_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAMR90_RS05835Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LJCL01000008.1Sequence record reported by the local genomic context database.
Genomic interval2 335-3 096 nt762 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 335-3 096 ntGCF_002891625::NZ_LJCL01000008.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002891625::NZ_LJCL01000008.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJCL01000008.1All displayed genes belong to this local TCS context.
Neighborhood span2 335-3 096 nt762 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 335 nt3 096 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AMR90_RS05835GCF_002891625#AMR90_RS05835
RRLytTRCurrent focus
2 335-3 096 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002891625#AMR90_RS05835The current gene is the representative for this cluster.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0696894
Simplified PFAM architecture for RROC_0696894
PFAM domain coverage: 92 / 253 aa (36.4%)
1 aa253 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[155-246]
- Domain count: 1
- Matched identifier: RROC_0696894
- Positioned domains: LytTR 155-246 ; LytTR 155-246
Cluster members and taxonomy
Representative gene: GCF_002891625#AMR90_RS05835
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 1 over 1 total members. Page 1 / 1.
GCF_002891625#AMR90_RS05835 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002891625
AssemblyASM289162v1 · Scaffoldhaploid
Genome composition4 268 222 bp · 28,0% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key