1 Response_reg#1
48-153 aa · 106 aa · 38.4% of protein
Raw token
Response_reg:48:7.05e-28:153:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AMR88_RS01565
Response regulator OmpR family
Clostridioides difficile · GCF_002891615
ClassRRTypeOmpRLength276 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002891615#AMR88_RS01565Stable P2CS identifier used across views.
GenomeGCF_002891615Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length276 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 276 aa (65.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa276 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
196-271 aa · 76 aa · 27.5% of protein
Raw token
Trans_reg_C:196:4.34e-28:271:76:77- Raw architecture: Response_reg:48:7.05e-28:153:107:111#Trans_reg_C:196:4.34e-28:271:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002891615::NZ_LJCI01000001.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span352865-353695Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002891615::NZ_LJCI01000001.1::G00007Context members
AMR88_RS01565
Partner locus tags
AMR88_RS01565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330399779.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAMR88_RS01565Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LJCI01000001.1Sequence record reported by the local genomic context database.
Genomic interval352 865-353 695 nt831 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span352 865-353 695 ntGCF_002891615::NZ_LJCI01000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002891615::NZ_LJCI01000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJCI01000001.1All displayed genes belong to this local TCS context.
Neighborhood span352 865-353 695 nt831 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
352 865 nt353 695 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AMR88_RS01565GCF_002891615#AMR88_RS01565
RROmpRCurrent focus
352 865-353 695 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301165#BGU11_RS12345Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0603245
Simplified PFAM architecture for RROC_0603245
PFAM domain coverage: 185 / 276 aa (67.0%)
1 aa276 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[48-156] | Trans_reg_C[196-271]
- Domain count: 2
- Matched identifier: RROC_0603245
- Positioned domains: Response_reg 48-156 ; Response_reg 48-156 ; Trans_reg_C 196-271 ; Trans_reg_C 196-271
Cluster members and taxonomy
Representative gene: GCF_002301165#BGU11_RS12345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002891615
AssemblyASM289161v1 · Scaffoldhaploid
Genome composition4 208 917 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key