1 HisKA#1
562-628 aa · 67 aa · 8.6% of protein
Raw token
HisKA:562:2.85e-18:628:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AMR89_RS00465
Histidine kinase, Classic
Clostridioides difficile · GCF_002891605
ClassHKTypeClassicLength782 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002891605#AMR89_RS00465Stable P2CS identifier used across views.
GenomeGCF_002891605Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length782 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 782 aa (22.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
675-779 aa · 105 aa · 13.4% of protein
Raw token
HATPase_c:675:0.000000000262:779:110:109- Raw architecture: HisKA:562:2.85e-18:628:67:64#HATPase_c:675:0.000000000262:779:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002891605::NZ_LJCK01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span104559-107595Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002891605::NZ_LJCK01000001.1::G00004Context members
AMR89_RS00460AMR89_RS00465
Partner locus tags
AMR89_RS00460AMR89_RS00465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_254048521.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAMR89_RS00465Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LJCK01000001.1Sequence record reported by the local genomic context database.
Genomic interval105 247-107 595 nt2 349 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span104 559-107 595 ntGCF_002891605::NZ_LJCK01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002891605::NZ_LJCK01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJCK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span104 559-107 595 nt3 037 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
104 559 nt107 595 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AMR89_RS00460GCF_002891605#AMR89_RS00460
RROmpR
104 559-105 275 nt · Forward (+)
AMR89_RS00465GCF_002891605#AMR89_RS00465
HKClassicCurrent focus
105 247-107 595 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002891605#AMR89_RS00465The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0590735
Simplified PFAM architecture for HKOC_0590735
PFAM domain coverage: 172 / 782 aa (22.0%)
1 aa782 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[562-628] | HATPase_c[675-779]
- Domain count: 2
- Matched identifier: HKOC_0590735
- Positioned domains: HisKA 562-628 ; HATPase_c 675-779
Cluster members and taxonomy
Representative gene: GCF_002891605#AMR89_RS00465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002891605
AssemblyASM289160v1 · Scaffoldhaploid
Genome composition4 144 242 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key