1 Response_reg#1
5-96 aa · 92 aa · 90.2% of protein
Raw token
Response_reg:5:4.59e-19:96:93:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AMR93_RS20930
Response regulator, CheY family
Clostridioides difficile · GCF_002891495
ClassRRTypeCheYLength102 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_002891495#AMR93_RS20930Stable P2CS identifier used across views.
GenomeGCF_002891495Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length102 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage92 / 102 aa (90.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:4.59e-19:96:93:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_002891495::NZ_LJCJ01000002.1::G00026
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span324846-330390Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002891495::NZ_LJCJ01000002.1::G00026Context members
AMR93_RS04550AMR93_RS04555AMR93_RS04560AMR93_RS04565AMR93_RS20930
Partner locus tags
AMR93_RS04550AMR93_RS04555AMR93_RS04560AMR93_RS04565AMR93_RS20930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_237672761.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAMR93_RS20930Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LJCJ01000002.1Sequence record reported by the local genomic context database.
Genomic interval330 082-330 390 nt309 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span324 846-330 390 ntGCF_002891495::NZ_LJCJ01000002.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002891495::NZ_LJCJ01000002.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJCJ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span324 846-330 390 nt5 545 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
324 846 nt330 390 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
AMR93_RS04550GCF_002891495#AMR93_RS04550
HKClassic
324 846-325 961 nt · Reverse (-)
AMR93_RS04555GCF_002891495#AMR93_RS04555
RROmpR
325 997-326 695 nt · Reverse (-)
AMR93_RS04560GCF_002891495#AMR93_RS04560
RROmpR
327 077-327 757 nt · Reverse (-)
AMR93_RS04565GCF_002891495#AMR93_RS04565
HKClassic
327 807-329 822 nt · Reverse (-)
AMR93_RS20930GCF_002891495#AMR93_RS20930
RRCheYCurrent focus
330 082-330 390 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002891495#AMR93_RS20930The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2471235
Simplified PFAM architecture for RROC_2471235
PFAM domain coverage: 90 / 102 aa (88.2%)
1 aa102 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-94]
- Domain count: 1
- Matched identifier: RROC_2471235
- Positioned domains: Response_reg 5-94 ; Response_reg 5-94
Cluster members and taxonomy
Representative gene: GCF_002891495#AMR93_RS20930
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 1 over 1 total members. Page 1 / 1.
GCF_002891495#AMR93_RS20930 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002891495
AssemblyASM289149v1 · Contighaploid
Genome composition4 282 787 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key